BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0660.1
(326 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABA94875.1 retrotransposon protein, putative, Ty1-copia subclass... 204 4e-57
AAX96308.1 retrotransposon protein, putative, Ty1-copia sub-clas... 202 4e-55
CAN74381.1 hypothetical protein VITISV_007944 [Vitis vinifera] 199 1e-53
>ABA94875.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 626
Score = 204 bits (518), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 152/271 (56%), Gaps = 29/271 (10%)
Query: 70 EGKITMKKVFTTENPADMLTKAVTTFKFKHYLDLMGFPDVSPTRAGATMAQRPKGYAQKY 129
+G I KV+T + + +K K D G D R A KG+ Q+Y
Sbjct: 322 QGGIRKPKVYTDDTEGKNIIDCKWVYKVKRKAD--GSLDRYKARLVA------KGFKQRY 373
Query: 130 GSDYDETFSPIVKPVTIRLILSVAITKGWQVKQLDVKNAFLHGYLDTEVYMEQPIDFINK 189
G D ++TF+P++K TIR +LS+A+++GW ++QLDV+NAFLHG L+ EVYM QP + N
Sbjct: 374 GIDNEDTFNPVIKAATIRTVLSIAVSRGWSLQQLDVQNAFLHGVLEEEVYMRQPPGYENS 433
Query: 190 TYPDHVCRLHKAIYGLKQAPRACLTRFTTYLQELGFNGSKSDTSLFTYQSSSSIIILLLY 249
+ PD +C+L KA+YGLKQAPRA R + LQ+LGF SK+DTSLF + + + +L+Y
Sbjct: 434 SKPDFICKLDKALYGLKQAPRAWYARLSGKLQQLGFKPSKADTSLFYFNKGNVTMFILIY 493
Query: 250 VDDILITGTLGSGL---------------------FYSNAFTPSNTSLTAYSDADWAGDP 288
VDDI++ + + F N L DADWAG
Sbjct: 494 VDDIIVASSTKDAVPALLHDLKEDFALKDLGELHYFLGIEVNKVNNGLILTQDADWAGCL 553
Query: 289 DTRRSMSGSCIYFGNHLICWTSKKQLTVSRS 319
D RRS G +Y G++L+ W+++KQ TVSRS
Sbjct: 554 DDRRSTGGFAVYLGSNLVSWSARKQATVSRS 584
>AAX96308.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA91730.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1094
Score = 202 bits (515), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 142/217 (65%), Gaps = 15/217 (6%)
Query: 123 KGYAQKYGSDYDETFSPIVKPVTIRLILSVAITKGWQVKQLDVKNAFLHGYLDTEVYMEQ 182
KG+ Q+YG DY++TFS +VK TIR+ILS+A+++GW ++QLDV+NAFLHGYL+ EVYM+Q
Sbjct: 663 KGFKQRYGIDYEDTFSLVVKAATIRIILSLAVSRGWSLRQLDVQNAFLHGYLEEEVYMQQ 722
Query: 183 PIDFINKTYPDHVCRLHKAIYGLKQAPRACLTRFTTYLQELGFNGSKSDTSLFTYQSSSS 242
P F + T P V +L KA+YGLKQAPRA R + L +LGF+GSK+DT LF
Sbjct: 723 PPGFEDPTKPQFVYKLDKALYGLKQAPRAWFARLSKKLTDLGFSGSKADTLLFFLNRGGV 782
Query: 243 IIILLLYVDDILI-------TGTLGSGLFYSNAF--------TPSNTSLTAYSDADWAGD 287
I +L+YVDDI++ T L L A +T ++ +SDADWAG
Sbjct: 783 TIFVLVYVDDIIVASSSERATAALLQDLKGEFALKDLGLKIHKSGSTLVSGFSDADWAGS 842
Query: 288 PDTRRSMSGSCIYFGNHLICWTSKKQLTVSRSQGRNQ 324
D RRS G ++ G++L+ W+++KQ TVSRS +++
Sbjct: 843 LDDRRSTGGFAVFLGSNLVSWSARKQATVSRSSTKSE 879
>CAN74381.1 hypothetical protein VITISV_007944 [Vitis vinifera]
Length = 1884
Score = 199 bits (505), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 13/209 (6%)
Query: 123 KGYAQKYGSDYDETFSPIVKPVTIRLILSVAITKGWQVKQLDVKNAFLHGYLDTEVYMEQ 182
+G++Q G D+ ETFSP++K TIR+I S+A+ GW+++QLDVKNAFLHG+L EV+MEQ
Sbjct: 988 RGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVILGWKMRQLDVKNAFLHGFLKEEVFMEQ 1047
Query: 183 PIDFINKTYPDHVCRLHKAIYGLKQAPRACLTRFTTYLQELGFNGSKSDTSLFTYQSSSS 242
P FIN+ P+HVC+L++++YGLKQAPRA R + L LGF K+D+SLF + +
Sbjct: 1048 PPGFINEVLPNHVCKLNRSLYGLKQAPRAWFDRLSQCLLHLGFCCGKADSSLFILRKVNK 1107
Query: 243 II--------ILLLYVDDIL--ITGTLGSGLFYSNAFTPSNTSLTAYSDADWAGDPDTRR 292
L V IL + GT+ G+ + F S+ LT + DADWAG +TRR
Sbjct: 1108 ACQHFQAPTKADLXAVKRILRYLKGTMEHGIXF---FKQSSLRLTGFCDADWAGCTNTRR 1164
Query: 293 SMSGSCIYFGNHLICWTSKKQLTVSRSQG 321
S SG CI+ G + I W+SK+Q TVSRS
Sbjct: 1165 STSGYCIFLGANCISWSSKRQPTVSRSSA 1193
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 2 EVEYMTATEVVKETIWLSGLVLDISLK-QEVTAVYYDNQSAIHLTKNQMYQERTKHIDVR 60
E EY + E WL+ L+ DI ++ +E + DN SA+H+T N ++ R+KHI++
Sbjct: 1194 EAEYRSLASSAAEITWLTFLLRDIGIQLREPPQLLCDNLSALHMTVNPVFHARSKHIELD 1253
Query: 61 YHFIKDVIEEGKITMKKVFTTENPADMLTKAV--TTFKF 97
YHF+++ + G + + + ++ AD+ TKA+ T+F+F
Sbjct: 1254 YHFVREKVARGVLITRFLPSSLQVADIFTKALPKTSFQF 1292