BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1260.1
(328 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN81793.1 hypothetical protein VITISV_020571 [Vitis vinifera] 439 e-142
KYP35727.1 Retrovirus-related Pol polyprotein from transposon TN... 429 e-140
KYP52774.1 Retrovirus-related Pol polyprotein from transposon TN... 424 e-139
>CAN81793.1 hypothetical protein VITISV_020571 [Vitis vinifera]
Length = 1193
Score = 439 bits (1129), Expect = e-142, Method: Compositional matrix adjust.
Identities = 220/325 (67%), Positives = 251/325 (77%), Gaps = 28/325 (8%)
Query: 4 VEAIGVFWIQLCTGFYLYLENTFVVPSFRRNLISVSCLDKSGFTCSFGNGLFSISLKSDI 63
V+AIG+F +QL +G L LE TFVVPSFRRNLISVSCLDK G+
Sbjct: 198 VKAIGLFRLQLDSGCTLDLEETFVVPSFRRNLISVSCLDKFGYC---------------- 241
Query: 64 VGTGNLNKSGFTCSFGNGLFSISLKSDIVGTGNLIDKLYLLNTIKSNCDENLHISTLGTK 123
CSFGNG+ S+ L S+I+G G+L DKLY LN +N +E LH S G K
Sbjct: 242 ------------CSFGNGMVSLYLNSNIIGIGSLTDKLYKLNIKATNGNETLHSSNYGIK 289
Query: 124 RRLANENSSILWHKRLGHISQERIQRLVSEGILDSLNDSEYKICIERVKGKQTNKRGKGA 183
R+L NENSS+LWHKRLGHIS ++IQRLV EGILD L+ S++++CIE +KGKQTN R K A
Sbjct: 290 RKLMNENSSMLWHKRLGHISNQQIQRLVLEGILDPLDFSDFQVCIECIKGKQTNMRKKNA 349
Query: 184 YRATQPLDLIHTDICGSFPKASSNGQRYFISFIDDYSRYGYLYLIQEKSESLDKFQIFKA 243
R + L+LIHTDICG FP S NGQ+YFI+FIDDYSRYGYLYLI EKS+SLD F+ FKA
Sbjct: 350 NRCSDVLELIHTDICGPFPTPSWNGQQYFITFIDDYSRYGYLYLINEKSQSLDVFKNFKA 409
Query: 244 EVENQLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFAQYLSECGIVPQYTMPRTPSQNGV 303
EVENQL KKIKAV+SDRGGEYYGRYDGSGEQRPGPFA+YL ECGIVPQYTMP TPSQNGV
Sbjct: 410 EVENQLSKKIKAVRSDRGGEYYGRYDGSGEQRPGPFAKYLMECGIVPQYTMPGTPSQNGV 469
Query: 304 AERRNRTLKDMVRSMISHSSLPESL 328
AERRNRTLKDMVRSMISHS+LPESL
Sbjct: 470 AERRNRTLKDMVRSMISHSTLPESL 494
>KYP35727.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 935
Score = 429 bits (1103), Expect = e-140, Method: Compositional matrix adjust.
Identities = 218/327 (66%), Positives = 251/327 (76%), Gaps = 30/327 (9%)
Query: 2 VKVEAIGVFWIQLCTGFYLYLENTFVVPSFRRNLISVSCLDKSGFTCSFGNGLFSISLKS 61
V VEAIG F +QL TGF+L L TFVVPSFRRNLIS+S LDK G
Sbjct: 307 VTVEAIGTFRLQLKTGFHLDLFETFVVPSFRRNLISISSLDKFG---------------- 350
Query: 62 DIVGTGNLNKSGFTCSFGNGLFSISLKSDIVGTGNLIDKLYLLNTIKSNCDENLHISTLG 121
F+CSFGN FS+ S++VG+G+LID LYLL+ + SN EN HI + G
Sbjct: 351 ------------FSCSFGNNKFSLYQNSNVVGSGSLIDNLYLLDVVSSN-KENFHIDSRG 397
Query: 122 TKRRLANENSSILWHKRLGHISQERIQRLVSEGILDSLNDSEYKICIERVKGKQTNKRGK 181
TKR++ NENS+ LWHKRLGHIS++RIQRLVS+ IL+ + S++++C+E +KGKQTN R
Sbjct: 398 TKRKI-NENSATLWHKRLGHISKQRIQRLVSDEILEPFDLSDFEVCVECIKGKQTNSRKL 456
Query: 182 GAYRATQPLDLIHTDICGSFPKASSNGQRYFISFIDDYSRYGYLYLIQEKSESLDKFQIF 241
GA RA L+LIHTDICG FP AS NGQ+YFI+FIDDYSRYGYL+LI EKS+SLD F+ F
Sbjct: 457 GAERAKDVLELIHTDICGPFPTASWNGQQYFITFIDDYSRYGYLFLIHEKSQSLDVFKSF 516
Query: 242 KAEVENQLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFAQYLSECGIVPQYTMPRTPSQN 301
KAEVE QLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFA +L ECGIVPQYTMP PS N
Sbjct: 517 KAEVELQLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFALFLRECGIVPQYTMPGKPSMN 576
Query: 302 GVAERRNRTLKDMVRSMISHSSLPESL 328
GVAERRNRTLKDMVRSMISHSSLPESL
Sbjct: 577 GVAERRNRTLKDMVRSMISHSSLPESL 603
>KYP52774.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 835
Score = 424 bits (1089), Expect = e-139, Method: Compositional matrix adjust.
Identities = 217/327 (66%), Positives = 250/327 (76%), Gaps = 30/327 (9%)
Query: 2 VKVEAIGVFWIQLCTGFYLYLENTFVVPSFRRNLISVSCLDKSGFTCSFGNGLFSISLKS 61
V VEAIG F +QL TGF+L L TFVVPSFRRNLIS+S LDK G
Sbjct: 179 VTVEAIGTFRLQLKTGFHLDLFETFVVPSFRRNLISISSLDKFG---------------- 222
Query: 62 DIVGTGNLNKSGFTCSFGNGLFSISLKSDIVGTGNLIDKLYLLNTIKSNCDENLHISTLG 121
F+CSFGN FS+ S++VG+G+LID LYLL+ + SN EN +I + G
Sbjct: 223 ------------FSCSFGNNKFSLYQNSNVVGSGSLIDNLYLLDVVSSN-KENFNIDSRG 269
Query: 122 TKRRLANENSSILWHKRLGHISQERIQRLVSEGILDSLNDSEYKICIERVKGKQTNKRGK 181
TKR++ NENS+ LWHKRLGHIS++RIQRLVS+ IL+ N S++++C+E +KGKQTN R
Sbjct: 270 TKRKI-NENSATLWHKRLGHISKQRIQRLVSDEILEPFNLSDFEVCVECIKGKQTNSRKL 328
Query: 182 GAYRATQPLDLIHTDICGSFPKASSNGQRYFISFIDDYSRYGYLYLIQEKSESLDKFQIF 241
GA RA L+LIHTDICG FP AS NGQ+YFI+FIDDYSRY YL+LI EKS+SLD F+ F
Sbjct: 329 GAERAKDVLELIHTDICGPFPTASWNGQQYFITFIDDYSRYDYLFLIHEKSQSLDVFKSF 388
Query: 242 KAEVENQLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFAQYLSECGIVPQYTMPRTPSQN 301
KAEVE QLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFA +L ECGIVPQYTMP PS N
Sbjct: 389 KAEVELQLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFALFLRECGIVPQYTMPGKPSMN 448
Query: 302 GVAERRNRTLKDMVRSMISHSSLPESL 328
GVAERRNRTLKDMVRSMISHSSLPESL
Sbjct: 449 GVAERRNRTLKDMVRSMISHSSLPESL 475