BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1420.1
(255 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADC55379.1 gag-pol polyprotein [Oryza brachyantha] 91 3e-17
XP_016206571.1 PREDICTED: uncharacterized protein LOC107646944 [... 88 3e-17
AAX95203.1 retrotransposon protein, putative, Ty3-gypsy sub-clas... 89 2e-16
>ADC55379.1 gag-pol polyprotein [Oryza brachyantha]
Length = 1393
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 128/271 (47%), Gaps = 22/271 (8%)
Query: 1 MDGLHSSIHKRMLETEGCTFVEVVTRAQNIEKELQIVSRKADITAGSSGQ---------- 50
+ GL + K++L + F ++V +A E + + +K + S Q
Sbjct: 217 LGGLDDELKKQLLSGDYADFEKLVDKAIRQEDQHLQMDKKRKASQFRSNQPPPQKPRFHT 276
Query: 51 GQYKRARIQGEGSGKGQRQGPPATTSPSSWKSQRGPEQRQIP-----QQRQMSQPGQTRQ 105
G Y + G+ + ++ P ++ SS SQR P QR +P QQ Q
Sbjct: 277 GPYPSNQQHGQSTFIVRQHRPYNPSNFSSSSSQRAPTQRALPELAPRQQNAPPPTAQPPP 336
Query: 106 SRQQAGQPARQGGMRCWTCQDVGHRSRDCPK--KGQQQVMHAKTNAISGEEARESFDVVE 163
+R+ AG A+ G C+ C D GH + CPK + Q+ + A+ N ++ EEA+ + +V+
Sbjct: 337 ARKDAG--AKPGV--CYNCGDPGHFADKCPKPKRSGQRFVQARVNHVTAEEAQAAPEVIL 392
Query: 164 GTILFCNVWLHVLFDPGSSKSYIKRQVVHDLGIPIEMTNQLLRVKTQLGIQELPLEYCRG 223
GT +V +LFD G++ S+I R+ V LG+ E +RV T G Y
Sbjct: 393 GTFPVNSVPATILFDSGATHSFISRKFVGMLGLKREKLRDPMRVNTP-GHSMFSDLYSPV 451
Query: 224 YAVRVEDREIIILLIVFDVQDYDMIIGMDWL 254
+ ++ + LI+ + +D D+I+GMDWL
Sbjct: 452 VPIEIQGTPFLANLILLESKDLDVILGMDWL 482
>XP_016206571.1 PREDICTED: uncharacterized protein LOC107646944 [Arachis ipaensis]
Length = 254
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 5/167 (2%)
Query: 92 PQQRQMSQPGQTRQSRQQAGQPARQGGMRCWTCQDVGHRSRDCPKKGQQQV----MHAKT 147
PQQ QM +P + ++ G+P + G+ C++C GH ++DCPKK Q + +
Sbjct: 5 PQQAQM-RPVCRQCGKEHGGRPCQLTGVICFSCGQPGHMAKDCPKKPVQGIDRLRQQGRV 63
Query: 148 NAISGEEARESFDVVEGTILFCNVWLHVLFDPGSSKSYIKRQVVHDLGIPIEMTNQLLRV 207
A++ ++A +S +++G + L VL+D G+S S+I V H+LG+ M + L +
Sbjct: 64 FAMTTDDAMKSDSLIQGQCYVKSRLLTVLYDSGASHSFIFETVAHELGLDFTMLDYNLII 123
Query: 208 KTQLGIQELPLEYCRGYAVRVEDREIIILLIVFDVQDYDMIIGMDWL 254
+T L + C+ +E R I L+ + D+I+G+DWL
Sbjct: 124 RTPTSQNALTSQVCQQVPFVIEARTFIHDLVCLPLCGLDIILGLDWL 170
>AAX95203.1 retrotransposon protein, putative, Ty3-gypsy sub-class, partial
[Oryza sativa Japonica Group]
Length = 1566
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 124/269 (46%), Gaps = 21/269 (7%)
Query: 1 MDGLHSSIHKRMLETEGCTFVEVVTRAQNIEKELQIVSRKADITAGSSGQGQYKRARIQG 60
M GL + +++ + F +V +A E + + RK + QG ++R R+
Sbjct: 534 MAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAPQGSHQRPRLT- 592
Query: 61 EGSGKGQRQGPPATT-------SPSSWKSQRGPEQRQIPQQRQMSQPGQTRQSRQQAGQP 113
GQ+ GP +PS++ Q Q + + Q+GQP
Sbjct: 593 ----PGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGSQPNRGTAPRPPMAPAQSGQP 648
Query: 114 A---RQGGMR---CWTCQDVGHRSRDCPK--KGQQQVMHAKTNAISGEEARESFDVVEGT 165
A ++ G + C+ C ++GH + CPK + + + A+ N S EEA+ + +VV GT
Sbjct: 649 AQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGT 708
Query: 166 ILFCNVWLHVLFDPGSSKSYIKRQVVHDLGIPIEMTNQLLRVKTQLGIQELPLEYCRGYA 225
++ VLFD G++ S+I ++ V G+ E + +RV T G +++
Sbjct: 709 FPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSIT 767
Query: 226 VRVEDREIIILLIVFDVQDYDMIIGMDWL 254
+ ++ + LI+ + +D D+I+GMDWL
Sbjct: 768 IEIQRSPFLANLILLESKDLDVILGMDWL 796