BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1440.1
(121 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass... 80 2e-15
CAE03845.1 OSJNBb0089K06.4 [Oryza sativa Japonica Group] 80 4e-15
AAK52165.1 putative polyprotein [Oryza sativa Japonica Group] AB... 77 7e-15
>ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 6 SSSIRWLLEKEKLNGDNFMVWEWNLGLVLRSEHKANVLDTPIPV--LNEDSTEQEREQER 63
S ++R +LEKEKL G NFM W NL +VLR EHK VL P P N S Q RE E+
Sbjct: 8 SFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNASAAQRREHEK 67
Query: 64 NIRKRFEPITCLMLATMESNLQDKFMEIDAYTMILVTR 101
+ I+CLMLATM LQ ++ +DA+T+I R
Sbjct: 68 RCNDYLD-ISCLMLATMSPELQSQYEALDAHTIITGLR 104
>CAE03845.1 OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 3 TKDSSSIRWLLEKEKLNGDNFMVWEWNLGLVLRSEHKANVLDTPIPV--LNEDSTEQERE 60
T + ++R +LEKEKL G NFM W NL +VLR EHK VL P PV N Q RE
Sbjct: 5 TPSNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTQPFPVDLPNNAIAAQCRE 64
Query: 61 QERNIRKRFEPITCLMLATMESNLQDKFMEIDAYTMILVTR 101
ER + + I+CLMLATM +Q ++ +DA+T+I R
Sbjct: 65 HERRCNE-YHDISCLMLATMSPKIQRQYEALDAHTIITGLR 104
>AAK52165.1 putative polyprotein [Oryza sativa Japonica Group] ABF97077.1
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 262
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 6 SSSIRWLLEKEKLNGDNFMVWEWNLGLVLRSEHKANVLDTPIP--VLNEDSTEQEREQER 63
S ++R +LEKE+L G NFM W NLG+VLR EHK VL P P + N Q E E+
Sbjct: 8 SFNLRSILEKEELTGTNFMDWYCNLGIVLRQEHKEFVLTQPFPADLPNNAPVAQRSEHEK 67
Query: 64 NIRKRFEPITCLMLATMESNLQDKFMEIDAYTMILVTR 101
+ I+CLMLATM Q ++ +DA+T+I R
Sbjct: 68 RCNDYLD-ISCLMLATMSPEFQRQYEALDAHTIITGLR 104