BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1990.1
(220 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP54199.1 Retrovirus-related Pol polyprotein from transposon TN... 222 1e-69
KYP59970.1 Retrovirus-related Pol polyprotein from transposon TN... 222 1e-67
GAU23463.1 hypothetical protein TSUD_331610 [Trifolium subterran... 223 2e-65
>KYP54199.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 256
Score = 222 bits (565), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 133/222 (59%), Gaps = 56/222 (25%)
Query: 1 MERVPYASAVGSLMYAMVCTRPDIAHAVDTVNRFLSNPGKEHWVVVKWILRYLRGTSGLK 60
MERVPYASAVGSLMY MVCTRPDIAHAV TVNRFLSNPG+EHW VKWILRYL GT +K
Sbjct: 32 MERVPYASAVGSLMYEMVCTRPDIAHAVGTVNRFLSNPGREHWNAVKWILRYLHGTVDMK 91
Query: 61 LTFGGDQSLHVSYTDADMAGDIDSSKSTSGYLVTFAGGAVAWRSRLQ------------- 107
L F GD+ V Y+D+DMAGD+DS KSTSGYL+ FAGGAVAW+SRLQ
Sbjct: 92 LCFRGDKPTLVGYSDSDMAGDVDSRKSTSGYLIKFAGGAVAWQSRLQKCVALSTIEVKFI 151
Query: 108 ---------------------------------SALHF----------LPLKLRYHRIRD 124
SA+H + +RYH IRD
Sbjct: 152 AITEACKELLWLKKFLQELGFVQEKYLLFVDSQSAIHLGKNPTFHSRSKHIDVRYHLIRD 211
Query: 125 VVASKELELVKVHPDDNGADTMMKALPKGKLEVCRGIAGLVV 166
+ +K LEL K+H DDNGAD M KALP+ K E+C IA L V
Sbjct: 212 ALDAKLLELAKIHTDDNGADMMTKALPREKFEICYEIASLAV 253
>KYP59970.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 412
Score = 222 bits (565), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 136/222 (61%), Gaps = 56/222 (25%)
Query: 1 MERVPYASAVGSLMYAMVCTRPDIAHAVDTVNRFLSNPGKEHWVVVKWILRYLRGTSGLK 60
MERVPYASAVGSLMYAMVCTRP IAHAV TV+RFLSNPG+EHW VKWILRYL GT +K
Sbjct: 186 MERVPYASAVGSLMYAMVCTRPYIAHAVGTVSRFLSNPGREHWNSVKWILRYLHGTVDMK 245
Query: 61 LTFGGDQSLHVSYTDADMAGDIDSSKSTSGYLVTFAGGAVAWRSRL-------------- 106
L FGGD+ V Y+D+DMAGD+DS KSTSGYL+ FAGGAVAW+SRL
Sbjct: 246 LCFGGDKPTLVGYSDSDMAGDVDSRKSTSGYLIKFAGGAVAWQSRLQRCVTLSTTEAEFI 305
Query: 107 --------------------------------QSALHF----------LPLKLRYHRIRD 124
QSA+H + +RYH IRD
Sbjct: 306 AITEACKELLWLKKFLQELGFVQDKYPLFVDSQSAIHLGKNPTFHSRSKHIDVRYHWIRD 365
Query: 125 VVASKELELVKVHPDDNGADTMMKALPKGKLEVCRGIAGLVV 166
+ +K LEL K+H DDNGA+ M KALP+GK E+C IAGL V
Sbjct: 366 ALDAKLLELAKIHTDDNGANMMTKALPRGKFEICFEIAGLAV 407
>GAU23463.1 hypothetical protein TSUD_331610 [Trifolium subterraneum]
Length = 720
Score = 223 bits (568), Expect = 2e-65, Method: Composition-based stats.
Identities = 114/219 (52%), Positives = 134/219 (61%), Gaps = 56/219 (25%)
Query: 1 MERVPYASAVGSLMYAMVCTRPDIAHAVDTVNRFLSNPGKEHWVVVKWILRYLRGTSGLK 60
M+RVPYASAVGSLMYAMVCTRPDI HAV TV+RFLSNPG+EHW VKW+LRYLRGT+ ++
Sbjct: 72 MKRVPYASAVGSLMYAMVCTRPDITHAVGTVSRFLSNPGREHWNAVKWVLRYLRGTTCMR 131
Query: 61 LTFGGDQSLHVSYTDADMAGDIDSSKSTSGYLVTFAGGAVAWRSRL-------------- 106
L FGGD+ Y+D+DMAGDIDS KSTSGY++ FAGGAVAW+SRL
Sbjct: 132 LCFGGDKPTLEGYSDSDMAGDIDSRKSTSGYMIKFAGGAVAWQSRLQKCVALSTTEAEFI 191
Query: 107 --------------------------------QSALHF----------LPLKLRYHRIRD 124
QSA+H + +RYH IRD
Sbjct: 192 AITEACKELLWLKKFLQELGFVQYKYVLFVDSQSAIHLGKNPTFHNRSKHIDVRYHWIRD 251
Query: 125 VVASKELELVKVHPDDNGADTMMKALPKGKLEVCRGIAG 163
V+ +K LEL KVH DDNG+D M KALP+GK E C IA
Sbjct: 252 VLDAKLLELAKVHTDDNGSDMMTKALPRGKFEACCDIAA 290