BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0030.1
(129 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAT57914.1 Retrovirus-related Pol polyprotein from transposon TN... 167 3e-47
CAN68884.1 hypothetical protein VITISV_039230 [Vitis vinifera] 159 7e-47
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 163 4e-44
>JAT57914.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 529
Score = 167 bits (424), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 105/130 (80%), Gaps = 2/130 (1%)
Query: 1 MGNDAPCKVVGIGTIQIKMHDGVVRTITDIRHVQDLKRNLISLGTLDDNGCKHVDNQGGV 60
MGN+AP K +GIG+I+IKM+DG+VRT+T +RHV DLK+NLISLGTL+ NGCK+ +GGV
Sbjct: 315 MGNNAPRKTIGIGSIRIKMYDGIVRTLTQVRHVLDLKKNLISLGTLEANGCKY-SAEGGV 373
Query: 61 LRVSRGSLTVMKGLKKNGIYVLQGNTVTG-SVAVSSSDKEVETTKLWHMQLGHIIERGMA 119
LRVSRG+L +MK + N +Y L G TVTG + AVS S E E TKLWHM+LGH+ E+GM
Sbjct: 374 LRVSRGALILMKVKRTNSLYTLIGTTVTGAAAAVSPSMSESEVTKLWHMRLGHMSEKGMT 433
Query: 120 ILSKQGLLCG 129
+LSK+GLLCG
Sbjct: 434 MLSKRGLLCG 443
>CAN68884.1 hypothetical protein VITISV_039230 [Vitis vinifera]
Length = 220
Score = 159 bits (402), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 100/123 (81%), Gaps = 1/123 (0%)
Query: 1 MGNDAPCKVVGIGTIQIKMHDGVVRTITDIRHVQDLKRNLISLGTLDDNGCKHVDNQGGV 60
MGND CKVVGI TI+IKM+DG +RT+TD+RHV LK+NLISLGTLD NGC + +GGV
Sbjct: 99 MGNDEACKVVGIDTIRIKMYDGFIRTLTDVRHVPKLKKNLISLGTLDSNGCTY-KAEGGV 157
Query: 61 LRVSRGSLTVMKGLKKNGIYVLQGNTVTGSVAVSSSDKEVETTKLWHMQLGHIIERGMAI 120
LR+S+G+L VMKG K NG+Y L+G+TV G V VS+S +ETT+L+H++LGH+ E+G+ I
Sbjct: 158 LRISKGALVVMKGKKINGLYTLKGSTVIGVVVVSTSKSIIETTRLFHIRLGHMSEKGLTI 217
Query: 121 LSK 123
LSK
Sbjct: 218 LSK 220
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 163 bits (412), Expect = 4e-44, Method: Composition-based stats.
Identities = 74/127 (58%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 1 MGNDAPCKVVGIGTIQIKMHDGVVRTITDIRHVQDLKRNLISLGTLDDNGCKHVDNQGGV 60
MGND CK+ GIGTIQIK HDG ++T++++R + DLKRNLISLGTL+ GCK+ +GGV
Sbjct: 21 MGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKY-SAEGGV 79
Query: 61 LRVSRGSLTVMKGLKKNGIYVLQGNTVTGSVAVSSSDKEVETTKLWHMQLGHIIERGMAI 120
L+VS+G++ ++K + +Y+LQG+ VTGS AVSSS + + TKLWHM+LGH+ E+GM +
Sbjct: 80 LKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHL 139
Query: 121 LSKQGLL 127
LSKQGLL
Sbjct: 140 LSKQGLL 146