BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0070.1
(628 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 672 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 651 0.0
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 577 0.0
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/589 (57%), Positives = 417/589 (70%), Gaps = 35/589 (5%)
Query: 46 GAYVIEVNLADMADSPSRVFDTGCGAHIISELDELKEVRYLTKREMVLRVANKARVIVVA 105
G VI++NLA + + S VFDTG AH L ++ R L + E+ LRV N A V VA
Sbjct: 286 GINVIDINLA-TSPTDSWVFDTGSVAHSCKSLQGMRRSRGLRRGEVNLRVGNGASVATVA 344
Query: 106 VGTFELSLENGLILVLHNCYCVPTISRNIISVSVLDKEGYHAIIKDKCCSLYKGEMFYTS 165
VGT L L +GL+L L+NCYCVPT+ +N+IS S L EGY + CS+Y +MFY
Sbjct: 345 VGTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFH 404
Query: 166 AKLRNGLYVVNIE-DEILNINTKRLRTHDSNQSYLWHCRLGHINMKHMQKLHSDGLLGSC 224
A L NGLYV+N+E I NINT+R ++D N +++WHCRLGHIN K M+KLH DGLL S
Sbjct: 405 APLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSF 464
Query: 225 DLESYDTCEPCLVGKMTRSSFKEKGDRVSEPLGLIHTDVCGPMSTPTRGNYGYFIMFTDD 284
D ES++TCE CL+GKMT++ F +R S+ L L+HTDVCGPMS+ RG Y YFI FTDD
Sbjct: 465 DFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDD 524
Query: 285 FTRYGYVYLMRHKSESFEVFKQFLNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRSCGI 344
F+RYGY+YLMRHKSESFE FK+F NEV+N LGK IK +RSDRGGEY+SQEF +HL+ CGI
Sbjct: 525 FSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGI 584
Query: 345 VSQLTPPGTPQMNGVSERRNRTLMDMVRSMMNVADLANTFWGYALETAAFTLNRAPSKAV 404
V QLTPPGTPQ NGVSERRNRTL+DMVRSMM+ +DL +FWGYALETAA TLNR PSK+V
Sbjct: 585 VPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVPSKSV 644
Query: 405 EKTPYEIW------LSFLKGWGCDVYVKRLQGDKLAPKSDKCLFVGYPKETKGYYFYNPS 458
EKTPYEIW LSFLK WGC+ YVKRLQ DKL PKSDKC VGYPKETKGYYFYN
Sbjct: 645 EKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFVVGYPKETKGYYFYNRE 704
Query: 459 ENKVFVARDGVFLEKEFLSKKTSGRNIEIEEVRSEQQTDAVVPMSEVAIPNYSEPIEKER 518
+ KVFVAR GVFLEKEFLS++ SG + +EEV+ +T + +EP ++E
Sbjct: 705 QAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETPET----------VSATTEP-QQED 753
Query: 519 EEEMVDLGDPPAQSESDSQKNPQGVESVSPVVQAPRRSARLIELSQRQKLLLVEDNEPST 578
+ + D PA S+ + +AP R ++++ +LL++++EP T
Sbjct: 754 QSVAPPVVDTPAPRRSERSR------------RAPDRYTG----AEQRDILLLDNDEPKT 797
Query: 579 YKEAMTSPDSEKWLGGMKSEMESMSENQVWNLVDLPDGVEPIGCKWIFK 627
Y+EAM DS KWLG MKSE+ESM +NQVWNLVD PDGV+ I CKW+FK
Sbjct: 798 YEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFK 846
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/527 (61%), Positives = 382/527 (72%), Gaps = 50/527 (9%)
Query: 117 LILVLHNCYCVPTISRNIISVSVLDKEGYHAIIKDKCCSLYKGEMFYTSAKLRNGLYVVN 176
++L L NCY VP I++NIISVS LD EG+H IK+KCCS + +MFY SA L NGL+V+N
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60
Query: 177 IEDEILNINTKRLRTHDSNQSYLWHCRLGHINMKHMQKLHSDGLLGSCDLESYDTCEPCL 236
I NI TK+ +++D N ++LWHCRLGHIN KH+QKLHSDGLL S D ESY+TCE CL
Sbjct: 61 QSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCL 120
Query: 237 VGKMTRSSFKEKGDRVSEPLGLIHTDVCGPMSTPTRGNYGYFIMFTDDFTRYGYVYLMRH 296
+GKMT++ F +R S+ LGLIHTDVCGPMST RGNY YFI FTDDF+RYGYVYLM+H
Sbjct: 121 LGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKH 180
Query: 297 KSESFEVFKQFLNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRSCGIVSQLTPPGTPQM 356
KS+SFE FK+F NEV+NQ GK IKA+RSDRGGEYLSQ F DHLR CGIVSQLTPPGTPQ
Sbjct: 181 KSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQW 240
Query: 357 NGVSERRNRTLMDMVRSMMNVADLANTFWGYALETAAFTLNRAPSKAVEKTPYEIW---- 412
NGVSERRNRTL+DMVRSMM+ DL + FWGYALET+AF LNR PSK+VEKTPYEIW
Sbjct: 241 NGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKV 300
Query: 413 --LSFLKGWGCDVYVKRLQGDKLAPKSDKCLFVGYPKETKGYYFYNPSENKVFVARDGVF 470
LSFLK WGC+ Y KRL DKL PKSDKC FVGYPKETKGYYFY+P++NKVFV R+G F
Sbjct: 301 PNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAF 360
Query: 471 LEKEFLSKKTSGRNIEIEEVRSEQQTDAVVPMSEVAIPNYSEPIEKEREEEMVDLGDPPA 530
LE+EFLSK TSG + +EEVR E Q D VP S+ EE +DL
Sbjct: 361 LEREFLSKGTSGSKVLLEEVR-EPQGD--VPTSQ--------------EEHQLDLR---- 399
Query: 531 QSESDSQKNPQGVESVSPVVQAP--RRSARLIELSQR--------QKLLLVEDNEPSTYK 580
V P++ P RRS R R L ++E +EP++Y+
Sbjct: 400 -------------RVVEPILVEPEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYE 446
Query: 581 EAMTSPDSEKWLGGMKSEMESMSENQVWNLVDLPDGVEPIGCKWIFK 627
EA+ PDS+KWL KSEMESMS+N+VW LVDLPDGV+PI CKWIFK
Sbjct: 447 EALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFK 493
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 577 bits (1486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 280/444 (63%), Positives = 332/444 (74%), Gaps = 8/444 (1%)
Query: 46 GAYVIEVNLADMADSPSRVFDTGCGAHIISELDELKEVRYLTKREMVLRVANKARVIVVA 105
G VIE+NLA + + S VFDTG AHI L LK R L + E+ +RV N ARV VA
Sbjct: 262 GINVIEINLA-TSSTDSWVFDTGSVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVA 320
Query: 106 VGTFELSLENGLILVLHNCYCVPTISRNIISVSVLDKEGYHAIIKDKCCSLYKGEMFYTS 165
VGT LSL + L+L L+N YC+P + +N+IS S L EGY D CS+Y ++FY
Sbjct: 321 VGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAEGYGFRSVDNDCSVYYNDIFYFH 380
Query: 166 AKLRNGLYVVNIED-EILNINTKRLRTHDSNQSYLWHCRLGHINMKHMQKLHSDGLLGSC 224
A + +GLY+VN+ + NIN KR R +D N +++WHCRLGHIN K M+K+H DGLL S
Sbjct: 381 APMMSGLYIVNLNGYSVYNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSF 440
Query: 225 DLESYDTCEPCLVGKMTRSSFKEKGDRVSEPLGLIHTDVCGPMSTPTRGNYGYFIMFTDD 284
D ES++TCE CL+GKMT++ F + +R SE L L+HTDVCGPMS+ RG +GYF FTDD
Sbjct: 441 DFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDD 500
Query: 285 FTRYGYVYLMRHKSESFEVFKQFLNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRSCGI 344
F+RYGYVYLMRHKSESFE FK+F NEV+N LGK IK +RSDRGGEYLS EF +HL+ CGI
Sbjct: 501 FSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGI 560
Query: 345 VSQLTPPGTPQMNGVSERRNRTLMDMVRSMMNVADLANTFWGYALETAAFTLNRAPSKAV 404
V QLTPPGTPQ NGVSE RNRTL+DMVRSMM+ +L +FWGYALET AFTLN PSK+V
Sbjct: 561 VPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYALETTAFTLNSVPSKSV 620
Query: 405 EKTPYEIW------LSFLKGWGCDVYVKRLQGDKLAPKSDKCLFVGYPKETKGYYFYNPS 458
+KTPYEIW LSFLK WGC+VYVKRLQ DKL PKSDKC FVGYPKETKGYYFYN
Sbjct: 621 DKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNQE 680
Query: 459 ENKVFVARDGVFLEKEFLSKKTSG 482
E KVFVAR GVFLEKEF+S+K G
Sbjct: 681 EGKVFVARHGVFLEKEFISRKDIG 704