BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000071.1_g0260.1
(283 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAG50698.1 copia-type polyprotein, putative [Arabidopsis thalian... 374 e-117
CAB75469.1 copia-type reverse transcriptase-like protein [Arabid... 371 e-116
AAD50001.1 Hypothetical protein [Arabidopsis thaliana] 372 e-116
>AAG50698.1 copia-type polyprotein, putative [Arabidopsis thaliana] AAG50765.1
copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 374 bits (959), Expect = e-117, Method: Compositional matrix adjust.
Identities = 177/271 (65%), Positives = 215/271 (79%), Gaps = 1/271 (0%)
Query: 13 GYDIIRLKDLHLTLRDKSGTLIAKVKMAKNRLFPLNIQHGDAKCLNFTVKDKSWLWHLRL 72
GYDI RLKD +L++RD+ LI KV M+KNR+F LNI++ A+CL K++SWLWHLR
Sbjct: 414 GYDI-RLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRF 472
Query: 73 GHLNFDGMKTLASKNMVRGLPYIDHPNKVCEGCIFGKHHKTTFSKEGRWRAYNPLELVHT 132
GHLNF G++ L+ K MVRGLP I+HPN+VCEGC+ GK K +F KE RA PLEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHT 532
Query: 133 DVCGPLKPMTNGGNNYILTFIDDYSRKTWVYFLKNKSEVFEVFKEFKSMVEKQSGYVIKK 192
DVCGP+KP + G +NY L FIDD+SRKTWVYFLK KSEVFE+FK+FK+ VEK+SG VIK
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKT 592
Query: 193 LRSDRGGEFTSRDFDMFCKEHGIIHELTPPNTPQLNGVAERKNRNILNMARSLLKEKSLP 252
+RSDRGGEFTS++F +C+++GI +LT P +PQ NGVAERKNR IL MARS+LK K LP
Sbjct: 593 MRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLP 652
Query: 253 REFWGEAVACAVYLLNRCRTKSVYMKTPQEA 283
+E W EAVACAVYLLNR TKSV KTPQEA
Sbjct: 653 KELWAEAVACAVYLLNRSPTKSVSGKTPQEA 683
>CAB75469.1 copia-type reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1272
Score = 371 bits (952), Expect = e-116, Method: Compositional matrix adjust.
Identities = 176/271 (64%), Positives = 213/271 (78%), Gaps = 1/271 (0%)
Query: 13 GYDIIRLKDLHLTLRDKSGTLIAKVKMAKNRLFPLNIQHGDAKCLNFTVKDKSWLWHLRL 72
GYDI RLKD +L++RDK LI KV M+KNR+F LNI++ A+CL K++SWLWHLR
Sbjct: 414 GYDI-RLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRF 472
Query: 73 GHLNFDGMKTLASKNMVRGLPYIDHPNKVCEGCIFGKHHKTTFSKEGRWRAYNPLELVHT 132
GHLNF G++ L+ K MVRGLP I+HPN+VCEGC+ G K +F KE RA PLEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHT 532
Query: 133 DVCGPLKPMTNGGNNYILTFIDDYSRKTWVYFLKNKSEVFEVFKEFKSMVEKQSGYVIKK 192
DVCGP+KP + G +NY L FIDD+SRKTWVYFLK KSEVFE+FK+FK+ VEK+SG VIK
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKT 592
Query: 193 LRSDRGGEFTSRDFDMFCKEHGIIHELTPPNTPQLNGVAERKNRNILNMARSLLKEKSLP 252
+RSD GGEFTS++F +C+++GI +LT P +PQ NGVAERKNR IL MARS+LK K LP
Sbjct: 593 MRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLP 652
Query: 253 REFWGEAVACAVYLLNRCRTKSVYMKTPQEA 283
+E W EAVACAVYLLNR TKSV KTPQEA
Sbjct: 653 KELWAEAVACAVYLLNRSPTKSVSGKTPQEA 683
>AAD50001.1 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 372 bits (954), Expect = e-116, Method: Compositional matrix adjust.
Identities = 176/271 (64%), Positives = 214/271 (78%), Gaps = 1/271 (0%)
Query: 13 GYDIIRLKDLHLTLRDKSGTLIAKVKMAKNRLFPLNIQHGDAKCLNFTVKDKSWLWHLRL 72
GYDI RLKD +L++RD+ LI KV M+KNR+F LNI++ A+CL K++SWLWHLR
Sbjct: 414 GYDI-RLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRF 472
Query: 73 GHLNFDGMKTLASKNMVRGLPYIDHPNKVCEGCIFGKHHKTTFSKEGRWRAYNPLELVHT 132
GHLNF G++ L+ K MVRGLP I+HPN+VCEGC+ GK K +F KE RA PLEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHT 532
Query: 133 DVCGPLKPMTNGGNNYILTFIDDYSRKTWVYFLKNKSEVFEVFKEFKSMVEKQSGYVIKK 192
DVCGP+KP + G +NY L FIDD+SRKTWVYFLK KSEVFE+FK+FK+ VEK+SG VIK
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKT 592
Query: 193 LRSDRGGEFTSRDFDMFCKEHGIIHELTPPNTPQLNGVAERKNRNILNMARSLLKEKSLP 252
+RSDRGGEFTS++F +C+++GI +LT P +PQ NGV ERKNR IL MARS+LK K LP
Sbjct: 593 MRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLP 652
Query: 253 REFWGEAVACAVYLLNRCRTKSVYMKTPQEA 283
+E W EAVACAVYLLNR TKSV KTPQEA
Sbjct: 653 KELWAEAVACAVYLLNRSPTKSVSGKTPQEA 683