BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0080.1
(149 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN70013.1 hypothetical protein VITISV_017116 [Vitis vinifera] 71 1e-11
JAT62736.1 Retrovirus-related Pol polyprotein from transposon TN... 68 1e-10
KYP32211.1 Retrovirus-related Pol polyprotein from transposon TN... 67 2e-10
>CAN70013.1 hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 67 RSRSKSKPKKYRCFNCKKEGHFKRKCSELGKKPAEVAVIEEVDGSVLAIIEDCDEALVLA 126
+++SKS KK++CF C KEGHFK+ CS+ + + V E G I++ D A VL
Sbjct: 259 KAKSKSNTKKFKCFICHKEGHFKKDCSDKRQNTIKKTVNE---GDAAVILDGYDSAKVLN 315
Query: 127 INACFAEDWWILDTGCTFHVCP 148
+ + WILD+GC+FH+CP
Sbjct: 316 VAEMDSGKEWILDSGCSFHMCP 337
>JAT62736.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Anthurium amnicola]
Length = 439
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 55 QGRSQHVVDGEGRSRSKSKPKKYRCFNCKKEGHFKRKCSELGKKPAEVAVIEEVDGSVLA 114
+GR +H + RSRSKS+ K C CK+EGH+K C +L K+ + E V+ SV++
Sbjct: 94 RGRQKHKSGKQNRSRSKSRVKDNTCHYCKEEGHWKADCPKL-KEKIKRKQKEHVEASVVS 152
Query: 115 IIEDCDEALVLAINACFAEDWWILDTGCTFHVCPH 149
E E L ++ F++D WIL GC++H+CPH
Sbjct: 153 DSEKEGEVLTVSSGMDFSDD-WILVYGCSYHMCPH 186
>KYP32211.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan] KYP32214.1 Retrovirus-related
Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 255
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 19/136 (13%)
Query: 24 LKRELMRDNLLYDGIFYRKRYWSTSGHFMHHQGRSQHVVDGEGRSRSKSKPKKYR----- 78
L E +RD +L + + +R+ + G + +GR + G+G R +SK KK R
Sbjct: 55 LTFEGIRDLILGEDV-HRRNVGESVGSLLSTEGRGRRPERGQGSRRDRSKSKKRRQSKSR 113
Query: 79 ----CFNCKKEGHFKRKCSELGKKPAEVAVIEE-VDGSVLAIIEDCDEALVLAINACFAE 133
C+NC++ GHF+ +C+ A + E+ D ++ AI ED ++ L+ +++ F
Sbjct: 114 KDITCWNCQQNGHFRNQCT------APFSTKEKRYDNTMNAIQEDINDTLIYCVDSKFES 167
Query: 134 DWWILDTGCTFHVCPH 149
WI+D+G +FH P+
Sbjct: 168 --WIIDSGASFHASPY 181