BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0100.1
(265 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAT57914.1 Retrovirus-related Pol polyprotein from transposon TN... 204 6e-59
KYP46254.1 Retrovirus-related Pol polyprotein from transposon TN... 197 9e-56
KYP59893.1 Retrovirus-related Pol polyprotein from transposon TN... 196 3e-55
>JAT57914.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 529
Score = 204 bits (519), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 34 QGRSQH--VVDWKGRSRSKSKPKKYRYFN-CKKEGHFKRNCPELGKKLAEAAVIEEDDGS 90
+GRSQ KG RSKS+ K++ N CK +GH K C L K + E
Sbjct: 203 RGRSQERSFEKKKGERRSKSR-NKFKICNYCKMKGHIKSECYGLKNKQKKEEKNPEKAAE 261
Query: 91 VLAIIEDCDEAMVLAINACFAEDWWILDTGCTIHVCPHKEWFSTYTIINGGKVLMGNDAP 150
V ++C E VL++NA + D WILD+G + H+CP+K+ F TY +GG VLMGN+AP
Sbjct: 262 VGVAKDEC-EDYVLSVNAVRSNDEWILDSGYSYHMCPYKDRFHTYEHDDGGVVLMGNNAP 320
Query: 151 CKVVRIGTIQIKMHDGVVRSIKDTRHVPDFKRNLISLGILADNGYKFVGEGGVLRFSKGS 210
K + IG+I+IKM+DG+VR++ RHV D K+NLISLG L NG K+ EGGVLR S+G+
Sbjct: 321 RKTIGIGSIRIKMYDGIVRTLTQVRHVLDLKKNLISLGTLEANGCKYSAEGGVLRVSRGA 380
Query: 211 LTVTKGLKKNGLYLLLGNTVTG-SLAVSSSDKEVETTKLWHMHIGHMSERGMAILS 265
L + K + N LY L+G TVTG + AVS S E E TKLWHM +GHMSE+GM +LS
Sbjct: 381 LILMKVKRTNSLYTLIGTTVTGAAAAVSPSMSESEVTKLWHMRLGHMSEKGMTMLS 436
>KYP46254.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 197 bits (502), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 137/207 (66%), Gaps = 11/207 (5%)
Query: 61 CKKEGHFKRNCPELGKKLAEAAVIEEDDGSVLAIIEDCDEAMVLAI--NACFAEDWWILD 118
CK+ GH+K++CP+ + + A +ED + +VL+I N + + W+LD
Sbjct: 166 CKEPGHWKKDCPKKRNQKSVAVAAQEDSS--------FENELVLSIVDNHQHSAEQWVLD 217
Query: 119 TGCTIHVCPHKEWFSTYTIINGGKVLMGNDAPCKVVRIGTIQIKMHDGVVRSIKDTRHVP 178
+GC+ H+CP++ WF TY +GG V MGND CK + IGTIQIKMHDGV+R++ + RHVP
Sbjct: 218 SGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEVRHVP 277
Query: 179 DFKRNLISLGILADNGYKFVGEGGVLRFSKGSLTVTKGLKKNGLYLLLGNTVTGSLAVSS 238
D K+NLIS+G+L G+K EGGV+ SKGS V +G+KK LY+L G+T S +VS
Sbjct: 278 DLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGSTNLISESVSV 337
Query: 239 SDKEV-ETTKLWHMHIGHMSERGMAIL 264
+DK + T LWHM +GHMSERGM +L
Sbjct: 338 ADKHTPDLTHLWHMRLGHMSERGMMVL 364
>KYP59893.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 196 bits (497), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 140/210 (66%), Gaps = 15/210 (7%)
Query: 61 CKKEGHFKRNCPELGKKLAEAAVIEED----DGSVLAIIEDCDEAMVLAINACFAEDWWI 116
CK+ GH+K++CP+ + + +ED + VL+I+++ + F E W +
Sbjct: 218 CKEPGHWKKDCPKKRNQKSVVVAAQEDSSFENELVLSIVDN---------HQHFVEQW-V 267
Query: 117 LDTGCTIHVCPHKEWFSTYTIINGGKVLMGNDAPCKVVRIGTIQIKMHDGVVRSIKDTRH 176
LD+GC+ H+CP++ WF TY GG V MGND CK + IGTIQIKMHDGV+R++ + RH
Sbjct: 268 LDSGCSYHMCPNRSWFLTYEKKFGGDVFMGNDMACKTISIGTIQIKMHDGVIRTLTEVRH 327
Query: 177 VPDFKRNLISLGILADNGYKFVGEGGVLRFSKGSLTVTKGLKKNGLYLLLGNTVTGSLAV 236
VPD K+NLIS+G+L G+K EGGV+ +KGS V +G+KK LY+L G+T S ++
Sbjct: 328 VPDLKKNLISVGVLDTKGFKCNVEGGVMEINKGSTIVIRGIKKGNLYMLQGSTNLISESI 387
Query: 237 SSSDKE-VETTKLWHMHIGHMSERGMAILS 265
S +DK ++ T+LWHM +GHMSERGM +LS
Sbjct: 388 SVADKHTLDLTRLWHMRLGHMSERGMMVLS 417