BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0400.1
(230 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAN67644.1 hypothetical protein VITISV_028829 [Vitis vinifera] 105 1e-22
KYP33201.1 Retrovirus-related Pol polyprotein from transposon TN... 98 2e-22
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t... 105 2e-22
>CAN67644.1 hypothetical protein VITISV_028829 [Vitis vinifera]
Length = 831
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 1 MSSIRLV--LAASMNLEIEQLDVKTAFLHGDLEEDVYMEQPTGFEFKGKEHLVCKLEKSL 58
MSSIR+V LAASMNLEIEQLDVKT F HGDLEE++YME+P GF KGKE LVC+L+KSL
Sbjct: 470 MSSIRVVFGLAASMNLEIEQLDVKTVFFHGDLEEEIYMERPKGFTIKGKEALVCRLKKSL 529
Query: 59 YGLKQDSPGGHPSFE 73
YGLKQ + F+
Sbjct: 530 YGLKQAPRQWYKKFD 544
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 169 RKVPRQWYKIFESFMKDQGYHRTASDHCVFVHKFPDGDLIILLLYVDDMLIVGQDANKIS 228
++ PRQWYK F+SFM + Y +T S+HCVFV KF +G+ IILLLYVDDMLIVG D +KI
Sbjct: 533 KQAPRQWYKKFDSFMVEHRYDKTISNHCVFVKKFSNGEFIILLLYVDDMLIVGCDTSKID 592
Query: 229 RF 230
+
Sbjct: 593 KL 594
>KYP33201.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 143
Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 50/62 (80%)
Query: 169 RKVPRQWYKIFESFMKDQGYHRTASDHCVFVHKFPDGDLIILLLYVDDMLIVGQDANKIS 228
++ PRQWYK FESFM +QGY +T SDHCVFV KF D D IILLLYVDDMLIVG+D ++I
Sbjct: 44 KQAPRQWYKKFESFMCEQGYKKTTSDHCVFVKKFSDDDFIILLLYVDDMLIVGKDVSRID 103
Query: 229 RF 230
R
Sbjct: 104 RL 105
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 19 LDVKTAFLHGDLEEDVYMEQPTGFEFKGKEHLVCKLEKSLYGLKQDSPGGHPSFE 73
+DVK AFLHGDLEE++YM+QP GF+ KGKE VC+L K+LY LKQ + FE
Sbjct: 1 MDVKIAFLHGDLEEEIYMKQPDGFQVKGKEDCVCRLRKNLYSLKQAPRQWYKKFE 55
>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease CAA32025.1 unnamed protein product
[Nicotiana tabacum]
Length = 1328
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 81/133 (60%), Gaps = 6/133 (4%)
Query: 1 MSSIR--LVLAASMNLEIEQLDVKTAFLHGDLEEDVYMEQPTGFEFKGKEHLVCKLEKSL 58
M+SIR L LAAS++LE+EQLDVKTAFLHGDLEE++YMEQP GFE GK+H+VCKL KSL
Sbjct: 901 MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960
Query: 59 YGLKQDSPGGHPSFE-VLSSHSL---HSDPGDPTSEGEANKQANTGTGSDDQLIGDAIRG 114
YGLKQ + F+ + S + +SDP N DD LI +G
Sbjct: 961 YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKG 1020
Query: 115 RTKPLNGRVSQSI 127
L G +S+S
Sbjct: 1021 LIAKLKGDLSKSF 1033
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 169 RKVPRQWYKIFESFMKDQGYHRTASDHCVFVHKFPDGDLIILLLYVDDMLIVGQDANKIS 228
++ PRQWY F+SFMK Q Y +T SD CV+ +F + + IILLLYVDDMLIVG+D I+
Sbjct: 964 KQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIA 1023
Query: 229 RF 230
+
Sbjct: 1024 KL 1025