BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0420.1
(126 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN... 108 4e-25
AAK29467.1 polyprotein-like [Solanum chilense] 105 6e-24
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t... 104 8e-24
>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1321
Score = 108 bits (270), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Query: 24 TLVVSLSNSAPDGIMRMNHVT-GVLDDEGYHNHFGDEKWKLTKGTMVIARGKKCCTLYRT 82
TL++ PD +R+N ++ VLD EGY + +WKLTKG++V+A+GK CCTLY+T
Sbjct: 340 TLILKDVRHIPD--IRLNLISVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCCTLYKT 397
Query: 83 QVKQCKGELNAVEKDSSTDLWHRRLGHMSEKGLKSL 118
VK CKG+LNAVE D+S +LWHRRL H+SEKGL+ L
Sbjct: 398 YVKVCKGQLNAVENDASPNLWHRRLAHISEKGLQLL 433
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 3 LVLDDELQALLLPNSFLDHWETLVVSLSNSAPDGIMRMNHV-TGVLDDE 50
L L+DE+QALLL S D W+TLVVSLSNSAP+G + +N V +L++E
Sbjct: 136 LTLEDEMQALLLLGSLPDSWDTLVVSLSNSAPEGKVSLNMVRNSILNEE 184
>AAK29467.1 polyprotein-like [Solanum chilense]
Length = 1328
Score = 105 bits (261), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 70/96 (72%), Gaps = 3/96 (3%)
Query: 24 TLVVSLSNSAPDGIMRMNHVTGV-LDDEGYHNHFGDEKWKLTKGTMVIARGKKCCTLYRT 82
TLV+ PD +RMN ++G+ LD +GY N+F ++KW+LTKG +VIA+G TLYRT
Sbjct: 348 TLVLKDVRHVPD--LRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRT 405
Query: 83 QVKQCKGELNAVEKDSSTDLWHRRLGHMSEKGLKSL 118
+ C+GELNA +++S DLWH+R+GH SEKGL+ L
Sbjct: 406 NAEICQGELNAAHEENSADLWHKRMGHTSEKGLQIL 441
>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease CAA32025.1 unnamed protein product
[Nicotiana tabacum]
Length = 1328
Score = 104 bits (260), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Query: 24 TLVVSLSNSAPDGIMRMNHVTGV-LDDEGYHNHFGDEKWKLTKGTMVIARGKKCCTLYRT 82
TLV+ PD +RMN ++G+ LD +GY ++F ++KW+LTKG++VIA+G TLYRT
Sbjct: 347 TLVLKDVRHVPD--LRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRT 404
Query: 83 QVKQCKGELNAVEKDSSTDLWHRRLGHMSEKGLKSL 118
+ C+GELNA + + S DLWH+R+GHMSEKGL+ L
Sbjct: 405 NAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQIL 440