BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0540.1
(155 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-clas... 187 2e-56
AAP44605.1 putative polyprotein [Oryza sativa Japonica Group] 194 1e-54
ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass... 194 1e-54
>AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92972.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 305
Score = 187 bits (475), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 123/212 (58%), Gaps = 57/212 (26%)
Query: 1 MIGLCQETYIDKILDRFMMKDSKRGFLPMSHGIVLRNNQCPKNPDERARMSEVPYASAIG 60
+IGL Q TYIDK+L RF M+DSK+GFLPMSH I L NQC + DER +MS +PYASAIG
Sbjct: 23 LIGLRQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCSQTTDERNKMSVIPYASAIG 82
Query: 61 SIM-----------YAMICTP--------------------------------------- 70
SIM YA+ T
Sbjct: 83 SIMYAMLCTRPDVSYALSATSRYQSDPGETHWIAVKNILKYLIRTKDMFLVYGGQEELVV 142
Query: 71 -------LEADRDDFRSESCYVFCLNGGVVSCKSSKQSTVADSTTKAKYLAASEAAKEGV 123
+ D+DDFRS+S +VFCLNGG VS KSSKQ T+A+STTK +Y+AASEAAKE V
Sbjct: 143 NDYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTLANSTTKTEYIAASEAAKEAV 202
Query: 124 WIMKFVIELGVISGIEEGIALYCDNNGAIAQA 155
WI KFV +LGV++ + LYCDN+GAIAQA
Sbjct: 203 WIKKFVSQLGVMTSTSSPMDLYCDNSGAIAQA 234
>AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 194 bits (493), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 126/212 (59%), Gaps = 57/212 (26%)
Query: 1 MIGLCQETYIDKILDRFMMKDSKRGFLPMSHGIVLRNNQCPKNPDERARMSEVPYASAIG 60
+IGL Q TYIDK+L RF M+DSK+GFLPMSHGI L NQCP+ DER +MS +PYASAIG
Sbjct: 902 LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 961
Query: 61 SIM-----------YAMICTP--------------------------------------- 70
SIM YA+ T
Sbjct: 962 SIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEELVV 1021
Query: 71 -------LEADRDDFRSESCYVFCLNGGVVSCKSSKQSTVADSTTKAKYLAASEAAKEGV 123
+ D+DDFRS+S +VFCLNGG VS KSSKQ TVADSTT+A+Y+AASEAAKE V
Sbjct: 1022 NGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAV 1081
Query: 124 WIMKFVIELGVISGIEEGIALYCDNNGAIAQA 155
WI KFV +LGV++ + LYCDN+GAIAQA
Sbjct: 1082 WIKKFVSQLGVMTSASSPMDLYCDNSGAIAQA 1113
>ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 194 bits (493), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 126/212 (59%), Gaps = 57/212 (26%)
Query: 1 MIGLCQETYIDKILDRFMMKDSKRGFLPMSHGIVLRNNQCPKNPDERARMSEVPYASAIG 60
+IGL Q TYIDK+L RF M+DSK+GFLPMSHGI L NQCP+ DER +MS +PYASAIG
Sbjct: 989 LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 1048
Query: 61 SIM-----------YAMICTP--------------------------------------- 70
SIM YA+ T
Sbjct: 1049 SIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEELVV 1108
Query: 71 -------LEADRDDFRSESCYVFCLNGGVVSCKSSKQSTVADSTTKAKYLAASEAAKEGV 123
+ D+DDFRS+S +VFCLNGG VS KSSKQ TVADSTT+A+Y+AASEAAKE V
Sbjct: 1109 NGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAV 1168
Query: 124 WIMKFVIELGVISGIEEGIALYCDNNGAIAQA 155
WI KFV +LGV++ + LYCDN+GAIAQA
Sbjct: 1169 WIKKFVSQLGVMTSASSPMDLYCDNSGAIAQA 1200