BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0560.1
(476 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABG22123.1 polyprotein, partial [Prunus avium] 284 5e-90
KYP42039.1 Retrovirus-related Pol polyprotein from transposon TN... 275 5e-85
JAT65344.1 Retrovirus-related Pol polyprotein from transposon TN... 272 2e-84
>ABG22123.1 polyprotein, partial [Prunus avium]
Length = 276
Score = 284 bits (727), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 181/265 (68%), Gaps = 37/265 (13%)
Query: 3 EIHRLKDQLKGELEMKDLGASRKILGMEIRRDRSARKLVLSHKTYIEKVLERFGMTE-AK 61
EI RLK QL E EMKDLG +RKILGMEI RDR+ K+ L K Y++KVL+RFGM E +K
Sbjct: 14 EIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSK 73
Query: 62 LVGTPLAAHFKLSGELSPTTDDETEYMSRVPFANAVGSIMYAMVCTRPDISHVVSVVSRY 121
V TPLA HFKLS +SP TD+E+ YM+++P+A+AVGS+MYAMVCTRPDIS VS+VSRY
Sbjct: 74 PVSTPLAPHFKLSASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRY 133
Query: 122 MGRPGRGHWQAVKWILWYLGGTAELGLVY----------------------DRRADTSGS 159
M PG+GHWQAVKWIL Y+ GT ++GL++ D+R T+G
Sbjct: 134 MHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCVVGYVDSDYAGDLDKRRSTTGF 193
Query: 160 LDSSAAVGGSAVY------------NESEYMAATEAVKEAIWQSGLVRDLGLKQEVTKVY 207
+ + A GG + E+EYMA TEA+KEAIW GL+ DLG++Q+ VY
Sbjct: 194 VFTIA--GGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVY 251
Query: 208 CDNQSAIQLSKNQMYHERIKHIDVR 232
CD+QSAI L+KNQ++H R KHIDVR
Sbjct: 252 CDSQSAIYLAKNQVHHARTKHIDVR 276
>KYP42039.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 394
Score = 275 bits (704), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 138/263 (52%), Positives = 176/263 (66%), Gaps = 32/263 (12%)
Query: 2 SEIHRLKDQLKGELEMKDLGASRKILGMEIRRDRSARKLVLSHKTYIEKVLERFGMTEAK 61
S I +LK QL E EMK+LGA++KILGMEI RDR KL LS + YIE++L+RF M K
Sbjct: 83 SLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCK 142
Query: 62 LVGTPLAAHFKLSGELSPTTDDETEYMSRVPFANAVGSIMYAMVCTRPDISHVVSVVSRY 121
V TPLAAHFKLS +L P T +E E MS VP+A+AVGS+MYAMVCTRPD+++ VS+VSRY
Sbjct: 143 PVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRY 202
Query: 122 MGRPGRGHWQAVKWILWYLGGTAELGLVYDRR------------ADTSGSLDSSAAVGG- 168
M PG+ HW AVKWI YL GT+ +GLV+DR +D G LD ++ G
Sbjct: 203 MHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGY 262
Query: 169 ------SAV-------------YNESEYMAATEAVKEAIWQSGLVRDLGLKQEVTKVYCD 209
SA+ E+EY++ATE VKEA+W GLV++LGL Q+V V+CD
Sbjct: 263 IFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCD 322
Query: 210 NQSAIQLSKNQMYHERIKHIDVR 232
+QSAI L+KN YH++ KHIDV+
Sbjct: 323 SQSAIHLTKNSRYHDKTKHIDVK 345
>JAT65344.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 346
Score = 272 bits (695), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 141/259 (54%), Positives = 173/259 (66%), Gaps = 29/259 (11%)
Query: 3 EIHRLKDQLKGELEMKDLGASRKILGMEIRRDRSARKLVLSHKTYIEKVLERFGMTEAKL 62
EI++LK L E EMKDLGA++KILGMEI+R+R A KL L+ Y++KVL+RF M +AK
Sbjct: 40 EINQLKALLSSEFEMKDLGAAKKILGMEIQRNRGAGKLFLTQARYVQKVLQRFDMWDAKP 99
Query: 63 VGTPLAAHFKLSGELSPTTDDETEYMSRVPFANAVGSIMYAMVCTRPDISHVVSVVSRYM 122
V TPLA HFKLS LSP + DE YMSRVP+++AVGS+MYAMVCTRPDIS VSVVSRYM
Sbjct: 100 VSTPLAVHFKLSASLSPQSTDEEVYMSRVPYSSAVGSLMYAMVCTRPDISQAVSVVSRYM 159
Query: 123 GRPGRGHWQAVKWILWYLGGTAELGLVYDRRADT-SGSLDSSAA---------------V 166
PG+ HWQAVKWI YL GT L + R +D SG +DS A V
Sbjct: 160 SNPGKVHWQAVKWIFRYLKGTVNTCLEFGRNSDILSGYVDSDFAGDLDRRRSLTGYVFSV 219
Query: 167 GGSAV-------------YNESEYMAATEAVKEAIWQSGLVRDLGLKQEVTKVYCDNQSA 213
GG AV E+E+MAATEAVKEA+W GL+ +L L + T +YCD+QSA
Sbjct: 220 GGCAVSWKATLQPTVALSTTETEFMAATEAVKEAMWLRGLLGELSLGHKETIIYCDSQSA 279
Query: 214 IQLSKNQMYHERIKHIDVR 232
I L+KN ++H R KHI +R
Sbjct: 280 IHLAKNPVFHARTKHIQLR 298