BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0660.1
(135 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 172 2e-47
AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-clas... 163 3e-47
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 171 5e-47
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 172 bits (436), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 94/115 (81%)
Query: 1 MTNSKRGFIPISHGMVLSKDQCLKSPDELAHMMKVPYASAIGSIMYVMICTRPDVSYALS 60
M +SK+GF+P+SHG+ LSK+QC ++ DE M VPYASAIGSIMY M+CTRPDVSYALS
Sbjct: 1058 MHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALS 1117
Query: 61 MCSRYQSNPGETHWNAVKNILKYQRRTKDHFLTYGGEDTLKVVGHVDASFQTDRD 115
SRYQS+PGE HW AVKNILKY RRTKD FL YGGE+ L V G+ DASFQTD+D
Sbjct: 1118 ATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKD 1172
>AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92972.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 305
Score = 163 bits (412), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 91/115 (79%)
Query: 1 MTNSKRGFIPISHGMVLSKDQCLKSPDELAHMMKVPYASAIGSIMYVMICTRPDVSYALS 60
M +SK+GF+P+SH + L K+QC ++ DE M +PYASAIGSIMY M+CTRPDVSYALS
Sbjct: 41 MQDSKKGFLPMSHDINLGKNQCSQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVSYALS 100
Query: 61 MCSRYQSNPGETHWNAVKNILKYQRRTKDHFLTYGGEDTLKVVGHVDASFQTDRD 115
SRYQS+PGETHW AVKNILKY RTKD FL YGG++ L V + DASFQTD+D
Sbjct: 101 ATSRYQSDPGETHWIAVKNILKYLIRTKDMFLVYGGQEELVVNDYTDASFQTDKD 155
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 171 bits (433), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 93/115 (80%)
Query: 1 MTNSKRGFIPISHGMVLSKDQCLKSPDELAHMMKVPYASAIGSIMYVMICTRPDVSYALS 60
M NSKRGF+P++HG+ LSK+QC + DE M +PYASAIGSIMY MICTRPDVSYALS
Sbjct: 638 MQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSYALS 697
Query: 61 MCSRYQSNPGETHWNAVKNILKYQRRTKDHFLTYGGEDTLKVVGHVDASFQTDRD 115
+ SRYQ++P E HW AVKNILKY RRTKD FL YGG++ L V G+ DASFQTD+D
Sbjct: 698 VTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKD 752