BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0670.1
(252 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABA97705.1 retrotransposon protein, putative, Ty1-copia subclass... 216 8e-62
AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-clas... 211 4e-61
BAA22288.1 polyprotein [Oryza australiensis] 217 5e-61
>ABA97705.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 216 bits (551), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 148/212 (69%), Gaps = 11/212 (5%)
Query: 37 ARALRRSQSLQEL--SQKTDVLLLEDNEPSIYNQAMTSPDFKKLLKAMRSEMDSMSENQV 94
++ +RR+ + L + + D+LLL+++EP+IY +AM PD +K L AM+S+++SM NQV
Sbjct: 473 SKRIRRTPARYALLTTGQRDILLLDNDEPTIYEEAMVGPDSEKWLGAMKSKIESMHVNQV 532
Query: 95 WDLIDLPDGPKPIGCKWVFKVKTDKDGNISVFKARLVAKGYKQIYGIDYAETFSPVAMHK 154
W+L+D PDG K I CKWVFK TD DGN+ ++KARLVAKG++QI G+DY ETFSPVAM K
Sbjct: 533 WNLVDPPDGVKAIKCKWVFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLK 592
Query: 155 SIRIILAVAAHYDYEIWQIDVKTAFLKRHLEEDVYMTQPEGFVDSIILERFASLKNPYMD 214
SIRI+L +AA++DYEIWQ+DVKTA L +L+EDVYMTQP+GFVD ++ L
Sbjct: 593 SIRIVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKL------ 646
Query: 215 SSKQAGVGIFDSTRKSKNLDFSIMQKSLVFTK 246
Q + +S N+ F + K+L F K
Sbjct: 647 ---QKSIYGLKKASRSWNIRFDKVVKALGFVK 675
>AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92973.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 591
Score = 211 bits (536), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 126/156 (80%)
Query: 54 DVLLLEDNEPSIYNQAMTSPDFKKLLKAMRSEMDSMSENQVWDLIDLPDGPKPIGCKWVF 113
D+LLL+++EP+ Y + M PD +K L AM+SE++SM NQ+W+L+D PDG K I CKWVF
Sbjct: 419 DILLLDNDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQIWNLVDPPDGVKAIECKWVF 478
Query: 114 KVKTDKDGNISVFKARLVAKGYKQIYGIDYAETFSPVAMHKSIRIILAVAAHYDYEIWQI 173
K KTD DGN+ ++K RLVAK Y+QI G+DY ETFSPVAM KSI+I+LA+A ++DYEIW++
Sbjct: 479 KKKTDVDGNVHIYKIRLVAKSYRQIQGVDYDETFSPVAMLKSIQIVLAIAVYFDYEIWKM 538
Query: 174 DVKTAFLKRHLEEDVYMTQPEGFVDSIILERFASLK 209
DVKTAFL +L+EDVYMTQP+GFVD ++++ L+
Sbjct: 539 DVKTAFLNANLDEDVYMTQPKGFVDPQLVKKICKLQ 574
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 217 bits (552), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 142/200 (71%), Gaps = 8/200 (4%)
Query: 7 VEIEKLVEPPAQVELNS------QETSQIIENTPKVARA--LRRSQSLQELSQKTDVLLL 58
V +E++ E P V + Q + + +TP R+ RR+ +++ D+LLL
Sbjct: 731 VHLEEVQETPETVSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDRYTGAEQRDILLL 790
Query: 59 EDNEPSIYNQAMTSPDFKKLLKAMRSEMDSMSENQVWDLIDLPDGPKPIGCKWVFKVKTD 118
+++EP Y +AM D K L AM+SE++SM +NQVW+L+D PDG K I CKW+FK K D
Sbjct: 791 DNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKAD 850
Query: 119 KDGNISVFKARLVAKGYKQIYGIDYAETFSPVAMHKSIRIILAVAAHYDYEIWQIDVKTA 178
DGN+ ++KARLVAKG+KQI G+DY ETFSPVAM KSIRIILA+AA++DYEIWQ+DVKTA
Sbjct: 851 MDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTA 910
Query: 179 FLKRHLEEDVYMTQPEGFVD 198
FL +L EDVYM QP+GFVD
Sbjct: 911 FLNGNLSEDVYMIQPQGFVD 930