BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000072.1_g0680.1
(300 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 343 e-107
AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-clas... 334 e-104
BAA22288.1 polyprotein [Oryza australiensis] 339 e-104
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 343 bits (880), Expect = e-107, Method: Compositional matrix adjust.
Identities = 154/220 (70%), Positives = 183/220 (83%)
Query: 81 VGTLKTKRLRSDDLNPSYLWHCRLGHINMTRMKKLHKNGLLGSYDLESYDTCESCLMGKM 140
+ ++TK+ +S+DLNP++LWHCRLGHIN ++KLH +GLL S+D ESY+TCESCL+GKM
Sbjct: 65 IYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKM 124
Query: 141 TRSSFKGKGDRAKESLELIHTDVCGPISTPVRGNYGYFITFTDDFTRYGYIYLMRHKSEP 200
T++ F G +RA + L LIHTDVCGP+ST RGNY YFITFTDDF+RYGY+YLM+HKS+
Sbjct: 125 TKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKS 184
Query: 201 FGMFKQFQNEVENQLGKKIKVIRSDRGGEYLSQEFDDHLRSCGIVSQLTPPGTPQKNGVS 260
F FK+FQNEV+NQ GK IK +RSDRGGEYLSQ F DHLR CGIVSQLTPPGTPQ NGVS
Sbjct: 185 FENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVS 244
Query: 261 ERRNCTLLDMVRSMMSLANLPNTLWEYALETTAFTLNRAP 300
ERRN TLLDMVRSMMS +LP+ W YALET+AF LNR P
Sbjct: 245 ERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCP 284
>AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA93176.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 334 bits (857), Expect = e-104, Method: Compositional matrix adjust.
Identities = 149/221 (67%), Positives = 182/221 (82%)
Query: 80 AVGTLKTKRLRSDDLNPSYLWHCRLGHINMTRMKKLHKNGLLGSYDLESYDTCESCLMGK 139
+V + KR R +DLNP+++WHCRLGHIN RM+KLH++GLL S+D ES++TCESCL+GK
Sbjct: 305 SVYNINAKRQRPNDLNPTFIWHCRLGHINERRMEKLHRDGLLHSFDFESFETCESCLLGK 364
Query: 140 MTRSSFKGKGDRAKESLELIHTDVCGPISTPVRGNYGYFITFTDDFTRYGYIYLMRHKSE 199
MT++ F G+ ++A E L L+HTDVCGP+S+ RG +GYFITFT+DF+RYGY+YLMRHKS+
Sbjct: 365 MTKAPFTGQSEKASELLGLVHTDVCGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSD 424
Query: 200 PFGMFKQFQNEVENQLGKKIKVIRSDRGGEYLSQEFDDHLRSCGIVSQLTPPGTPQKNGV 259
F FK+FQNEV+N LGK IK +RSDRGGEYLS EF +HL+ CGIV QLTPPGTPQ NGV
Sbjct: 425 SFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGV 484
Query: 260 SERRNCTLLDMVRSMMSLANLPNTLWEYALETTAFTLNRAP 300
SERRN TLLDMVRSMMS +LP + W Y LET AFTLNR P
Sbjct: 485 SERRNRTLLDMVRSMMSQTDLPLSFWGYTLETAAFTLNRVP 525
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 339 bits (869), Expect = e-104, Method: Compositional matrix adjust.
Identities = 152/225 (67%), Positives = 184/225 (81%)
Query: 76 VAAKAVGTLKTKRLRSDDLNPSYLWHCRLGHINMTRMKKLHKNGLLGSYDLESYDTCESC 135
+ A + + T+R S+D+NP+++WHCRLGHIN RM+KLHK+GLL S+D ES++TCESC
Sbjct: 416 LEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESC 475
Query: 136 LMGKMTRSSFKGKGDRAKESLELIHTDVCGPISTPVRGNYGYFITFTDDFTRYGYIYLMR 195
L+GKMT++ F G +RA + L L+HTDVCGP+S+ RG Y YFITFTDDF+RYGYIYLMR
Sbjct: 476 LLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMR 535
Query: 196 HKSEPFGMFKQFQNEVENQLGKKIKVIRSDRGGEYLSQEFDDHLRSCGIVSQLTPPGTPQ 255
HKSE F FK+FQNEV+N LGK IK +RSDRGGEY+SQEF +HL+ CGIV QLTPPGTPQ
Sbjct: 536 HKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQ 595
Query: 256 KNGVSERRNCTLLDMVRSMMSLANLPNTLWEYALETTAFTLNRAP 300
NGVSERRN TLLDMVRSMMS ++LP + W YALET A TLNR P
Sbjct: 596 WNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVP 640
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 2 CDLAQKNKGKKEGTHSFDQGIYVIEVNLANTFDSQSWVFDTGCGAHLISDVQGLKGIRYL 61
C ++ KK+ T S GI VI++NLA T + SWVFDTG AH +QG++ R L
Sbjct: 268 CKKYMEDLKKKQSTTS-ASGINVIDINLA-TSPTDSWVFDTGSVAHSCKSLQGMRRSRGL 325
Query: 62 SARELVLRGANRTTVAAKAVGTL 84
E+ LR N +VA AVGT+
Sbjct: 326 RRGEVNLRVGNGASVATVAVGTV 348