BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0390.1
(270 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAE04999.2 OSJNBb0093G06.7 [Oryza sativa Japonica Group] 136 8e-33
AAD17357.1 contains similarity to retrovirus-related polyprotein... 135 2e-32
AAR06328.1 putative polyprotein [Oryza sativa Japonica Group] 130 1e-30
>CAE04999.2 OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 120/188 (63%), Gaps = 8/188 (4%)
Query: 85 SRN-KSRLRKSGTSKAIRSGIGMSESKKELQLIRKNKGKKERTHGSDQGIYVIEVNLANT 143
+RN K++++K+G +K +G KK L+ +++ K++ S GI VIE+NLA T
Sbjct: 202 TRNSKTKVQKTGPAK--ETGHWKRNCKKYLEQLKQ---KQQNGKSSTSGINVIEINLA-T 255
Query: 144 FNSQSWVFDTGCGAHIISNVQGLKGIKYLSARELVLGVANKATVVVKAVGTFSLPLETGL 203
++ SWVFDTG AHI ++QGLK + L+ E+ + V N A V V AVGT SL L +GL
Sbjct: 256 SSTDSWVFDTGLVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGL 315
Query: 204 VLELHNCYYVPSISRNIICVSELDKEGYHLLIKNQRCSLYKGEMFYTSAKLYNGLYITNI 263
VLEL+NCY +P++ +N+I S L EGY + CS+Y ++FY +A + NGLYI N+
Sbjct: 316 VLELNNCYCIPALCKNVISASCLQAEGYGFRSVDNGCSVYYNDIFYFNAPMMNGLYIVNL 375
Query: 264 EN-EVFNI 270
+ V+NI
Sbjct: 376 DGCSVYNI 383
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 3 NFPDWEKRWRSVLKSTNKESVLDTPIPR-ITANSKVEEQKQAKSIRMKSVSVTCLMLATM 61
NF DW R VL+ +KE VL P P + N+ ++++ K + ++CLMLATM
Sbjct: 24 NFMDWYGNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHKKQCNDYLDISCLMLATM 83
Query: 62 EPNLENRFRKMDAHTIIRRLRDMSRNKSRLRKSGTSKAI 100
P L+ ++ +DAHTII LR+M +++R + TSK++
Sbjct: 84 SPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSL 122
>AAD17357.1 contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] CAB77943.1 putative transposon protein
[Arabidopsis thaliana]
Length = 769
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 90/142 (63%), Gaps = 1/142 (0%)
Query: 129 SDQGIYVIEVNLANTFNSQSWVFDTGCGAHIISNVQGLKGIKYLSARELVLGVANKATVV 188
S GIYVIEVN+ T W DTGCGAHI N+ G+ + ++ L +AN A V
Sbjct: 40 SSSGIYVIEVNVT-TSGFTPWELDTGCGAHICVNMHGINNSITMEEGQVDLRMANGARVS 98
Query: 189 VKAVGTFSLPLETGLVLELHNCYYVPSISRNIICVSELDKEGYHLLIKNQRCSLYKGEMF 248
VGT+SL +G+VLEL NCYYV +I++NII VS LD EG+H LIKN+ CS + +MF
Sbjct: 99 TLVVGTYSLSFPSGMVLELKNCYYVHAINKNIISVSCLDMEGFHFLIKNKCCSFDRNDMF 158
Query: 249 YTSAKLYNGLYITNIENEVFNI 270
Y SA L N LY+ N ++NI
Sbjct: 159 YGSAPLENELYVLNQSMPIYNI 180
>AAR06328.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 116/193 (60%), Gaps = 11/193 (5%)
Query: 85 SRNKSRLRKSGTSKAIR------SGIGMSESKKELQLIRKNKGKKERTHGSDQGIYVIEV 138
S +K++++K+G +K +G KK L+ +++ K++ S GI VIE+
Sbjct: 328 SNSKTKVQKTGPAKDAECFFYKETGHWKRNCKKYLEQLKQ---KQQDGKSSTSGINVIEI 384
Query: 139 NLANTFNSQSWVFDTGCGAHIISNVQGLKGIKYLSARELVLGVANKATVVVKAVGTFSLP 198
NLA T ++ SWVFDTG AHI ++QGLK + L+ + + V N V V AVGT +L
Sbjct: 385 NLA-TSSTDSWVFDTGSVAHICKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLS 443
Query: 199 LETGLVLELHNCYYVPSISRNIICVSELDKEGYHLLIKNQRCSLYKGEMFYTSAKLYNGL 258
L +GLVLEL+NCY +P++ +N+I S L EGY + CS+Y ++FY A + NGL
Sbjct: 444 LPSGLVLELNNCYCIPALCKNVISASCLQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGL 503
Query: 259 YITNIEN-EVFNI 270
YI N++ V+NI
Sbjct: 504 YIVNLDGCSVYNI 516
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 3 NFPDWEKRWRSVLKSTNKESVLDTPIPRITANSKVEEQKQAKSIRMKS-VSVTCLMLATM 61
N DW + R VL+ +KE VL P P N+ Q++ R K + ++CLMLATM
Sbjct: 116 NIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHERRCKEYLDISCLMLATM 175
Query: 62 EPNLENRFRKMDAHTIIRRLRDMSRNKSRLRKSGTSKAI 100
P L+ ++ +DAHTII LR+M +++R + TSK++
Sbjct: 176 SPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSL 214