BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0400.1
(331 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 390 e-125
AAM74249.1 Putative retroelement [Oryza sativa Japonica Group] 374 e-122
BAA22288.1 polyprotein [Oryza australiensis] 387 e-121
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 390 bits (1002), Expect = e-125, Method: Compositional matrix adjust.
Identities = 199/339 (58%), Positives = 243/339 (71%), Gaps = 41/339 (12%)
Query: 1 MSTPARGNYGYFITFTDDFTRYGYIYLMGHKSETFDMFKQFHNEVENQLGKKIKAIRSDR 60
MST ARGNY YFITFTDDF+RYGY+YLM HKS++F+ FK+F NEV+NQ GK IKA+RSDR
Sbjct: 151 MSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDR 210
Query: 61 GGEYWSQEFDDHLRSCGIVPQLTPPGTPQMNGVSERRNRTLLDMVRSMMSSTNLPNTFWG 120
GGEY SQ F DHLR CGIV QLTPPGTPQ NGVSERRNRTLLDMVRSMMS T+LP+ FWG
Sbjct: 211 GGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWG 270
Query: 121 YALETAAFTLNRTSSKVVEKTPYELWFGKVPKLSFLKVWGCKVYVKRLQGDKLEPKSDKC 180
YALET+AF LNR SK VEKTPYE+W GKVP LSFLK+WGC+ Y KRL DKL PKSDKC
Sbjct: 271 YALETSAFMLNRCPSKSVEKTPYEIWTGKVPNLSFLKIWGCESYAKRLITDKLGPKSDKC 330
Query: 181 LFVGYPKETRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQTNTDI 240
FVGYPKET+GYYFYH ++NKVFV R+G FLE+EFLSK TSG V ++E+R E Q +
Sbjct: 331 YFVGYPKETKGYYFYHPTDNKVFVVRNGAFLEREFLSKGTSGSKVLLEEVR-EPQGDV-- 387
Query: 241 EISRGLATPIYPQSMEEKNEVEIEKLVEPPAQVELNSQETSQIVEKTPKVAQAPRRSQRL 300
P S EE +++++ ++VEP +VE P+V RRS+R
Sbjct: 388 -----------PTSQEE-HQLDLRRVVEP------------ILVE--PEV----RRSERS 417
Query: 301 QE--------LFQKTDVLLLEDNESSTYNQTMTSPDSEK 331
+ + + ++E +E ++Y + + PDS+K
Sbjct: 418 RHEPDRFRDWVMDDHALFMIESDEPTSYEEALMGPDSDK 456
>AAM74249.1 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 374 bits (960), Expect = e-122, Method: Compositional matrix adjust.
Identities = 190/333 (57%), Positives = 236/333 (70%), Gaps = 27/333 (8%)
Query: 1 MSTPARGNYGYFITFTDDFTRYGYIYLMGHKSETFDMFKQFHNEVENQLGKKIKAIRSDR 60
MS+ ARG +GYFI FTDDF+RYGY+YLM HKSE+F+ FK+FHNEV+N L K IK +RSDR
Sbjct: 56 MSSTARGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDR 115
Query: 61 GGEYWSQEFDDHLRSCGIVPQLTPPGTPQMNGVSERRNRTLLDMVRSMMSSTNLPNTFWG 120
GGEYWS EF +HL+ CGIVPQLTPPGTPQ+NGVS+RRNRTLLDMVRSMMS T+LP +FWG
Sbjct: 116 GGEYWSLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWG 175
Query: 121 YALETAAFTLNRTSSKVVEKTPYELWFGKVPKLSFLKVWGCKVYVKRLQGDKLEP--KSD 178
YALETA FT+NR SK ++KTPYE+W GK P LSFLK+WGC+VYVKRLQ DKL P KSD
Sbjct: 176 YALETAVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSKSD 235
Query: 179 KCLFVGYPKETRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQTNT 238
KC FVGYPKET+GYYFY+ E KVFVAR GVFLEK+F+S++ SG
Sbjct: 236 KCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSG---------------- 279
Query: 239 DIEISRGLATPIYPQSMEEKNEVEIEKLVEPPAQVELNSQETSQIVEKTPKVAQAPRRSQ 298
+E +T PQ E+ ++E++V P S+ ++ ++ + P R
Sbjct: 280 SMETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPASR-------RSERIRRTPARYA 332
Query: 299 RLQELFQKTDVLLLEDNESSTYNQTMTSPDSEK 331
L + D+LLL ++E +TY + M P SEK
Sbjct: 333 LLTT--GQCDILLLGNDEPTTYEEAMVGPGSEK 363
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 387 bits (995), Expect = e-121, Method: Compositional matrix adjust.
Identities = 197/337 (58%), Positives = 236/337 (70%), Gaps = 40/337 (11%)
Query: 1 MSTPARGNYGYFITFTDDFTRYGYIYLMGHKSETFDMFKQFHNEVENQLGKKIKAIRSDR 60
MS+ ARG Y YFITFTDDF+RYGYIYLM HKSE+F+ FK+F NEV+N LGK IK +RSDR
Sbjct: 507 MSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDR 566
Query: 61 GGEYWSQEFDDHLRSCGIVPQLTPPGTPQMNGVSERRNRTLLDMVRSMMSSTNLPNTFWG 120
GGEY SQEF +HL+ CGIVPQLTPPGTPQ NGVSERRNRTLLDMVRSMMS ++LP +FWG
Sbjct: 567 GGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWG 626
Query: 121 YALETAAFTLNRTSSKVVEKTPYELWFGKVPKLSFLKVWGCKVYVKRLQGDKLEPKSDKC 180
YALETAA TLNR SK VEKTPYE+W G+ P LSFLK+WGC+ YVKRLQ DKL PKSDKC
Sbjct: 627 YALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKC 686
Query: 181 LFVGYPKETRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQTNTDI 240
VGYPKET+GYYFY+ + KVFVAR GVFLEKEFLS++ SG V ++E++ +T
Sbjct: 687 FVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETPET---- 742
Query: 241 EISRGLATPIYPQSMEEKNEVEIEKLVEPPAQVELNSQETSQIVEKTPKVAQAPRRSQRL 300
++ PQ ++ V PP V TP APRRS+R
Sbjct: 743 -----VSATTEPQQEDQS--------VAPP-------------VVDTP----APRRSERS 772
Query: 301 QEL------FQKTDVLLLEDNESSTYNQTMTSPDSEK 331
+ ++ D+LLL+++E TY + M DS K
Sbjct: 773 RRAPDRYTGAEQRDILLLDNDEPKTYEEAMVGHDSNK 809