BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0410.1
(229 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 348 e-111
BAA22288.1 polyprotein [Oryza australiensis] 352 e-110
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 342 e-108
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 348 bits (894), Expect = e-111, Method: Compositional matrix adjust.
Identities = 162/225 (72%), Positives = 189/225 (84%)
Query: 1 MMKVPYASAIGSIMYAMICTLPDVSYALSMCSRYQSNPGEAHWSAVKNILKYLRRTKDHF 60
M +PYASAIGSIMYAMICT PDVSYALS+ SRYQ++P E HW+AVKNILKYLRRTKD F
Sbjct: 669 MSDIPYASAIGSIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVF 728
Query: 61 LTYGGEDTLKVVSHVDGSFQTDKDDFKSQSGYVYCLNGGAVSWKSFKQSTIADSTTEAEY 120
L YGG++ L V + D SFQTDKDD++SQSG+V+ LNGGAVSWKS KQ T+ADSTTEAEY
Sbjct: 729 LVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTEAEY 788
Query: 121 LAASVAAKEGVWIKKFIIELGVVPGIEEGVTLYCDNNRAIAQAKEPRAHQKSKHIQRKYH 180
+AAS AAKEGVWI+ FI ELG+VP + LYCDNN AIAQAKEPR+HQKSKHI R+YH
Sbjct: 789 IAASEAAKEGVWIRNFITELGMVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYH 848
Query: 181 LIREIIEKKDVVICKVHTDDNVADLLTKLLPQPKHDSHMRGIGIK 225
LIRE++++ DV ICKVHTD N+AD LTK L QPKH++H R IGI+
Sbjct: 849 LIRELVDRGDVKICKVHTDLNIADPLTKPLTQPKHEAHTRAIGIR 893
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 352 bits (903), Expect = e-110, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 191/225 (84%)
Query: 1 MMKVPYASAIGSIMYAMICTLPDVSYALSMCSRYQSNPGEAHWSAVKNILKYLRRTKDHF 60
M VPYASAIGSIMYAM+CT PDVSYALS SRYQS+PGE HW+AVKNILKYLRRTKD F
Sbjct: 1089 MGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMF 1148
Query: 61 LTYGGEDTLKVVSHVDGSFQTDKDDFKSQSGYVYCLNGGAVSWKSFKQSTIADSTTEAEY 120
L YGGE+ L V + D SFQTDKDD++SQSG+V+CLNGGAVSWKS KQ T+ADSTTEAEY
Sbjct: 1149 LVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEY 1208
Query: 121 LAASVAAKEGVWIKKFIIELGVVPGIEEGVTLYCDNNRAIAQAKEPRAHQKSKHIQRKYH 180
+AAS AAKE VWIKKF+ ELGV+ ++LYCDN+ AIAQAKEPR+HQKSKHI R+YH
Sbjct: 1209 IAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYH 1268
Query: 181 LIREIIEKKDVVICKVHTDDNVADLLTKLLPQPKHDSHMRGIGIK 225
LIREI+++ DV ICKVHTD N+AD LTK LPQPKH++H R +GI+
Sbjct: 1269 LIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIR 1313
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 342 bits (878), Expect = e-108, Method: Compositional matrix adjust.
Identities = 164/227 (72%), Positives = 187/227 (82%)
Query: 1 MMKVPYASAIGSIMYAMICTLPDVSYALSMCSRYQSNPGEAHWSAVKNILKYLRRTKDHF 60
M K+PYASAIGSIMYAM+ T PDV+ ALSM SRYQS+PGE+HW V+NI KYLRRTKD F
Sbjct: 736 MSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKF 795
Query: 61 LTYGGEDTLKVVSHVDGSFQTDKDDFKSQSGYVYCLNGGAVSWKSFKQSTIADSTTEAEY 120
L YGG + L V + D SFQTDKDDF+SQSG+ +CLNGGAVSWKS KQST+ADSTTEAEY
Sbjct: 796 LVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEY 855
Query: 121 LAASVAAKEGVWIKKFIIELGVVPGIEEGVTLYCDNNRAIAQAKEPRAHQKSKHIQRKYH 180
+AAS AAKE VWI+KFI ELGVVP I + LYCDNN AIAQAKEP++HQKSKHIQR+YH
Sbjct: 856 IAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYH 915
Query: 181 LIREIIEKKDVVICKVHTDDNVADLLTKLLPQPKHDSHMRGIGIKRI 227
LIREII++ DV I +V TD NVAD TK LPQPKH+SH IGI+ I
Sbjct: 916 LIREIIDRGDVKISRVSTDANVADHFTKPLPQPKHESHTTAIGIRFI 962