BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g0730.1
(156 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-clas... 226 1e-71
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 238 5e-71
ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass... 237 4e-70
>AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92972.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 305
Score = 226 bits (576), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 123/156 (78%)
Query: 1 MIGLSQETYIDKILGRFQMKDSKRGFLPMTHGTVLCKTQSPRDLDEQARTTKVPYASAIG 60
+IGL Q TYIDK+L RF M+DSK+GFLPM+H L K Q + DE+ + + +PYASAIG
Sbjct: 23 LIGLRQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCSQTTDERNKMSVIPYASAIG 82
Query: 61 SIMYAMICTRPNVSYALSMCSRYQSDPSEDHWTAAKNILMYLRMRKDPFLVYGGKEALIV 120
SIMYAM+CTRP+VSYALS SRYQSDP E HW A KNIL YL KD FLVYGG+E L+V
Sbjct: 83 SIMYAMLCTRPDVSYALSATSRYQSDPGETHWIAVKNILKYLIRTKDMFLVYGGQEELVV 142
Query: 121 EGHVDASFQTEKVDFRTQSGYVFCLNGGVVSWKSSK 156
+ DASFQT+K DFR+QSG+VFCLNGG VSWKSSK
Sbjct: 143 NDYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSK 178
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 238 bits (607), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 127/156 (81%)
Query: 1 MIGLSQETYIDKILGRFQMKDSKRGFLPMTHGTVLCKTQSPRDLDEQARTTKVPYASAIG 60
+IGLSQE YIDK+L RF M++SKRGFLPM HG L K Q P DE+ + + +PYASAIG
Sbjct: 620 LIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIG 679
Query: 61 SIMYAMICTRPNVSYALSMCSRYQSDPSEDHWTAAKNILMYLRMRKDPFLVYGGKEALIV 120
SIMYAMICTRP+VSYALS+ SRYQ+DPSE HWTA KNIL YLR KD FLVYGG E L+V
Sbjct: 680 SIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVV 739
Query: 121 EGHVDASFQTEKVDFRTQSGYVFCLNGGVVSWKSSK 156
G+ DASFQT+K D+R+QSG+VF LNGG VSWKSSK
Sbjct: 740 NGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSK 775
>ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 237 bits (604), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 109/156 (69%), Positives = 128/156 (82%)
Query: 1 MIGLSQETYIDKILGRFQMKDSKRGFLPMTHGTVLCKTQSPRDLDEQARTTKVPYASAIG 60
+IGLSQ TYIDK+L RF M+DSK+GFLPM+HG L K Q P+ DE+ + + +PYASAIG
Sbjct: 774 LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIG 833
Query: 61 SIMYAMICTRPNVSYALSMCSRYQSDPSEDHWTAAKNILMYLRMRKDPFLVYGGKEALIV 120
SIMYAM+CT P+VSYALS SRYQSDP E HW A KNIL YLR KD FLVYGG+E L+V
Sbjct: 834 SIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVV 893
Query: 121 EGHVDASFQTEKVDFRTQSGYVFCLNGGVVSWKSSK 156
+G+ DASFQT+K DFR+QSG+VFCLNGG VSWKSSK
Sbjct: 894 KGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSK 929