BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000077.1_g0240.1
(199 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa] 98 2e-20
XP_013630471.1 PREDICTED: uncharacterized protein LOC106336242 [... 83 4e-15
CAB39638.1 RNA-directed DNA polymerase-like protein [Arabidopsis... 79 7e-14
>AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1747
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 27 DDFWTTARPPSMSPFWHSILKTKYTMRHNILWLIGDGTSIKIRTDPWIPSLPNKTPTLIN 86
DDF S S W S L + +R + W IGDG +++ DPW+P LP+ P L
Sbjct: 1180 DDFMEAELGSSPSYLWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVPGLPSFRPILRQ 1239
Query: 87 ELPDNLFW-VSDLISNSNNSWNIETLNKYFGNSSVQAIQEIIIPQSHQRDTSIWCPTYNG 145
P LF VSDL+ N N WN+E LN +F + +AI I + + + D +W NG
Sbjct: 1240 GAP--LFLRVSDLLHN-NGGWNMEALNYWFTDDECEAISSITVGATRRPDVYMWNYCKNG 1296
Query: 146 KFNTKSYY----AELRSLPVLSLDAYEFPWKKFWKIKGTNPNIQQFIWK 190
++ KS Y E R + + A WK WK+K P I F+W+
Sbjct: 1297 RYTVKSGYWLACEENREEAINIVLAPRNFWKHLWKLK-LPPKINHFLWR 1344
>XP_013630471.1 PREDICTED: uncharacterized protein LOC106336242 [Brassica oleracea
var. oleracea]
Length = 752
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 24 IINDDFWTTARPPSMSPFWHSILKTKYTMRHNILWLIGDGTSIKIRTDPWI----PSLPN 79
++D T S S W +L + +R + W++G G+SI + TDPW+ P PN
Sbjct: 318 CLHDLLMTLNASSSCSHGWRGVLVGREVLRKGMSWIVGIGSSINVWTDPWLSLDRPLSPN 377
Query: 80 KTPTLINELPDNLFWVSDLISNSNNSWNIETLNKYFGNSSVQAIQEIIIPQSHQRDTSIW 139
PT N + V+DLI WN+ + + + I++I++ D+ +W
Sbjct: 378 GPPTSAN----IVLLVADLIHPVTGEWNLAAIRSHLPHYE-DLIKKIVLSSCGMSDSLVW 432
Query: 140 CPTYNGKFNTKSYYAELRSLPVLSLDAY---EFPWKK-FWKIKGTNPNIQQFIWK 190
P +G ++TK+ YA L L++DA +F WKK W++K T+P IQ F+WK
Sbjct: 433 LPEKSGTYSTKTGYA----LTKLNVDAGMLDDFDWKKCVWQVK-TSPKIQHFLWK 482
>CAB39638.1 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
CAB78094.1 RNA-directed DNA polymerase-like protein
[Arabidopsis thaliana]
Length = 1274
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 31 TTARPPSMSPFWHSILKTKYTMRHNILWLIGDGTSIKIRTDPWI----PSLPNKTPTLIN 86
+A P S W IL + +R + W IG G SI + T+ W+ P P PT N
Sbjct: 832 CSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETN 891
Query: 87 ELPDNLFWVSDLISNSNNSWNIETLNKYFGNSSVQAIQEIIIPQSHQRDTSIWCPTYNGK 146
+ V DLI + SWN+E + K+ Q I++I I +D+ +W P +G+
Sbjct: 892 K----DLSVHDLICHDVKSWNVEAIRKHLPQYEDQ-IRKITINALPLQDSLVWLPVKSGE 946
Query: 147 FNTKSYY--AELRSLPVLSLDAYEFPWKK-FWKIKGTNPNIQQFIWKLI 192
+ TK+ Y A+L S P LD F W+K WKI T+P ++ F+WK +
Sbjct: 947 YTTKTGYALAKLNSFPASQLD---FNWQKNIWKIH-TSPKVKHFLWKAM 991