BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000077.1_g0430.1
(261 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAD17357.1 contains similarity to retrovirus-related polyprotein... 206 3e-58
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 169 3e-44
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 167 1e-43
>AAD17357.1 contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] CAB77943.1 putative transposon protein
[Arabidopsis thaliana]
Length = 769
Score = 206 bits (525), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 150/249 (60%), Gaps = 28/249 (11%)
Query: 36 SESKKELQLIQKNKGKKKGTHGSDQGIYVIEVNLANTFDSQSWVFDTGCGAHIISNVQGL 95
S + L+ ++KNK K S GIYVIEVN+ T W DTGCGAHI N+ G+
Sbjct: 22 SNPLEHLENLEKNKTFKI----SSSGIYVIEVNVT-TSGFTPWELDTGCGAHICVNMHGI 76
Query: 96 KGIKYLSERELILRAANRATVAAKAIGTFSLPLETGLVLEFHNCYYVPSISRNIISVSEF 155
+ E ++ LR AN A V+ +GT+SL +G+VLE NCYYV +I++NIISVS
Sbjct: 77 NNSITMEEGQVDLRMANGARVSTLVVGTYSLSFPSGMVLELKNCYYVHAINKNIISVSCL 136
Query: 156 SFKG----------KGDR-----AKEPLE--LIHTDVCGPMST------PTRGNYGYFIT 192
+G DR PLE L + P+ RGNY YFIT
Sbjct: 137 DMEGFHFLIKNKCCSFDRNDMFYGSAPLENELYVLNQSMPIYNIRTKRFNARGNYQYFIT 196
Query: 193 FTDDFTRYGYIYLMRHKSESFDMFKQFQSEVDNQLGKKIKAIRSNRGGEYLSQELDDHLR 252
FTDDF RYGY+YLM+HK ESF+ K+FQ+EV N+LGK IKA+RS+RGGEYLSQ DHLR
Sbjct: 197 FTDDFNRYGYVYLMKHKLESFEKSKEFQNEVKNKLGKSIKALRSDRGGEYLSQVFSDHLR 256
Query: 253 SCGIISQLT 261
CGI+SQLT
Sbjct: 257 ECGIVSQLT 265
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 169 bits (428), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 91/110 (82%)
Query: 152 VSEFSFKGKGDRAKEPLELIHTDVCGPMSTPTRGNYGYFITFTDDFTRYGYIYLMRHKSE 211
+++ F G +RA + L LIHTDVCGPMST RGNY YFITFTDDF+RYGY+YLM+HKS+
Sbjct: 124 MTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSK 183
Query: 212 SFDMFKQFQSEVDNQLGKKIKAIRSNRGGEYLSQELDDHLRSCGIISQLT 261
SF+ FK+FQ+EV NQ GK IKA+RS+RGGEYLSQ DHLR CGI+SQLT
Sbjct: 184 SFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLT 233
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 167 bits (423), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 92/110 (83%)
Query: 152 VSEFSFKGKGDRAKEPLELIHTDVCGPMSTPTRGNYGYFITFTDDFTRYGYIYLMRHKSE 211
+++ F G+ +RA + L LIHTDVCGPMST RG + YFITFTDD++RYGYIYLMRHKSE
Sbjct: 568 MTKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSE 627
Query: 212 SFDMFKQFQSEVDNQLGKKIKAIRSNRGGEYLSQELDDHLRSCGIISQLT 261
SF+ FK+FQ+EV NQLGK IK++RS+RGGE+LSQE +HL+ CGI+ QLT
Sbjct: 628 SFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEFGNHLKQCGIVPQLT 677
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 39 KKELQLIQKNKGKKKGTHGSDQGIYVIEVNLANTFDSQSWVFDTGCGAHIISNVQGLKGI 98
KK L ++KN G K T GI VI+V LA++ SWVFDTG AHI +++Q L
Sbjct: 356 KKYLADLKKNGGTKPST----SGINVIDVLLADS-SVNSWVFDTGSVAHICNSMQSLTKN 410
Query: 99 KYLSERELILRAANRATVAAKAIGTFSLPLETGLVLEFHNCYYVPSISRNIISVSEFSFK 158
+ ++ E+ LR N+A VAA + T L L +G ++E +NCYYVP++SRNIIS S +
Sbjct: 411 RRVARGEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNIISASCLMTE 470
Query: 159 G 159
G
Sbjct: 471 G 471