BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0060.1
(386 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP39695.1 Copia protein [Cajanus cajan] 575 0.0
KYP51658.1 Retrovirus-related Pol polyprotein from transposon TN... 560 0.0
KYP39293.1 Retrovirus-related Pol polyprotein from transposon TN... 556 0.0
>KYP39695.1 Copia protein [Cajanus cajan]
Length = 388
Score = 575 bits (1483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 275/388 (70%), Positives = 319/388 (82%), Gaps = 2/388 (0%)
Query: 1 MELPPGV--TNSEVGKVCKLKKALYGLKQSPRAWFGRFTKSMKAFGYKQSNFDHTLFIKQ 58
ME+PPGV S+ VCKLKKALYGLKQSPRAWFGR T +MK FGYKQSN DHTLFIK
Sbjct: 1 MEVPPGVQLAPSKESVVCKLKKALYGLKQSPRAWFGRLTLAMKKFGYKQSNSDHTLFIKH 60
Query: 59 KLGKLTALIVYVDDMVVTGNDSVEMEALKNYLSQEFEMKDLGQSKYFLGIEVARSSQGIF 118
GK+ LIVYVDDMV+TG+D EM+ L+ L+ EFEMKDLGQ KYFLGIE+ARS QGIF
Sbjct: 61 TKGKVAILIVYVDDMVLTGDDVEEMKLLEKRLAAEFEMKDLGQLKYFLGIEIARSEQGIF 120
Query: 119 MSQRKYILDLLVETGMLDCKPVDTPIEANHHLGIFSDQVPCDKGRYQRLVGRLIYLSHTR 178
+SQRKY+LDLL ETGML CKP DTPIE NH L I+ DQ+ DK RYQRLVG+LIYLSHTR
Sbjct: 121 LSQRKYVLDLLSETGMLACKPADTPIEMNHSLAIYPDQIETDKHRYQRLVGKLIYLSHTR 180
Query: 179 PDIAYSISVVSQFMHNPSEEHMKAVFRILRYLKKSLGKGLLFRKGGDMEVMGYTDADWAG 238
PDIAYS+S+VS+FMH+PSEEHM AV+RIL+YLK S GKGLLF K + GYTD+DWAG
Sbjct: 181 PDIAYSVSIVSRFMHSPSEEHMTAVYRILKYLKGSPGKGLLFSKNDRACIEGYTDSDWAG 240
Query: 239 DITDRRSTSGYFTFVCGNMVTFRAKKQKVVARSSAESELRGMAQGVCELLWIRNILKDLG 298
D T R+STSGYFTFV GN+VT+R+KKQKVVARSSAE+E RGMA G+CELLWIR+IL DLG
Sbjct: 241 DKTTRQSTSGYFTFVEGNLVTWRSKKQKVVARSSAEAEFRGMAYGICELLWIRSILADLG 300
Query: 299 FKLVKAMDLHCDNKAAIMIAHNLIQHDRMKHVEVDRFFIRENIDKGCICLPFVKSEDQLA 358
K + M+L CDNKAA+ IAHN +QHDR KHVEVDR FI+E +D I P+V+SEDQLA
Sbjct: 301 IKYEQPMNLLCDNKAAVEIAHNPVQHDRTKHVEVDRHFIKEKLDNQVIQTPYVRSEDQLA 360
Query: 359 DILTKRVCGRIFNKAIDKLGMIDIYAPS 386
D+LTK V GR+F + I+KLGMIDI+AP+
Sbjct: 361 DVLTKAVSGRVFEEVINKLGMIDIHAPT 388
>KYP51658.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 492
Score = 560 bits (1443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 269/388 (69%), Positives = 312/388 (80%), Gaps = 2/388 (0%)
Query: 1 MELPPGV--TNSEVGKVCKLKKALYGLKQSPRAWFGRFTKSMKAFGYKQSNFDHTLFIKQ 58
ME+PPGV S+ VCKLKKALY LKQSPRAWFGR +MK FGYKQSN DHTLFI
Sbjct: 105 MEVPPGVQLAPSKESVVCKLKKALYALKQSPRAWFGRLMLAMKKFGYKQSNSDHTLFINH 164
Query: 59 KLGKLTALIVYVDDMVVTGNDSVEMEALKNYLSQEFEMKDLGQSKYFLGIEVARSSQGIF 118
GK+ LIVYVDDMV+TG+D EM+ L+ L+ EFEMKDLGQ KYFLGIE+ARS QGIF
Sbjct: 165 NKGKVAILIVYVDDMVLTGDDVEEMKLLEKRLAAEFEMKDLGQLKYFLGIEIARSEQGIF 224
Query: 119 MSQRKYILDLLVETGMLDCKPVDTPIEANHHLGIFSDQVPCDKGRYQRLVGRLIYLSHTR 178
+SQRKYILDLL ETGML KP DTPIE NH L I+ DQ+ DK RYQRLVG+LIYLSHTR
Sbjct: 225 LSQRKYILDLLSETGMLAYKPTDTPIEMNHSLAIYLDQIETDKHRYQRLVGKLIYLSHTR 284
Query: 179 PDIAYSISVVSQFMHNPSEEHMKAVFRILRYLKKSLGKGLLFRKGGDMEVMGYTDADWAG 238
PDIAYS+S+VS+FMH+PSEEHM V+RILRYLK S GKGLLF K + GYTD+DWAG
Sbjct: 285 PDIAYSMSIVSRFMHSPSEEHMTTVYRILRYLKGSPGKGLLFSKNDRACIKGYTDSDWAG 344
Query: 239 DITDRRSTSGYFTFVCGNMVTFRAKKQKVVARSSAESELRGMAQGVCELLWIRNILKDLG 298
D T R+STSGYFTFV GN+VT+R+KKQKVVARSSA++E RGMA G+CELLWIR+IL DLG
Sbjct: 345 DKTTRQSTSGYFTFVEGNLVTWRSKKQKVVARSSAKAEFRGMAYGICELLWIRSILADLG 404
Query: 299 FKLVKAMDLHCDNKAAIMIAHNLIQHDRMKHVEVDRFFIRENIDKGCICLPFVKSEDQLA 358
K + M+L CDNKA + IAHN +QHDR KHVEVDR FI+E +D I P+V+SEDQL
Sbjct: 405 IKYEQPMNLFCDNKAVVEIAHNPVQHDRTKHVEVDRHFIKEKLDNHVIQTPYVRSEDQLV 464
Query: 359 DILTKRVCGRIFNKAIDKLGMIDIYAPS 386
D+LTK V GR+F + I+KLGMIDI+AP+
Sbjct: 465 DVLTKAVSGRVFEEVINKLGMIDIHAPT 492
>KYP39293.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 500
Score = 556 bits (1432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 262/390 (67%), Positives = 315/390 (80%), Gaps = 4/390 (1%)
Query: 1 MELPPGVTN----SEVGKVCKLKKALYGLKQSPRAWFGRFTKSMKAFGYKQSNFDHTLFI 56
M++PPG S VCKL++ LYGLKQSPR WFGR +MK +G++QSN DHTLF+
Sbjct: 111 MDIPPGYMEKSGKSGTKVVCKLQRTLYGLKQSPREWFGRLNLAMKKYGFQQSNADHTLFL 170
Query: 57 KQKLGKLTALIVYVDDMVVTGNDSVEMEALKNYLSQEFEMKDLGQSKYFLGIEVARSSQG 116
K + GK+TALIVYVDDM++TG+DS E+ L+ L EFEMK+LG KYFLGIEVARS QG
Sbjct: 171 KHRQGKITALIVYVDDMIITGDDSEEITRLQRKLGTEFEMKNLGGLKYFLGIEVARSKQG 230
Query: 117 IFMSQRKYILDLLVETGMLDCKPVDTPIEANHHLGIFSDQVPCDKGRYQRLVGRLIYLSH 176
IF+SQRKYILDLL E G+LDCKPVDTPI NH LG + DQVP +KGRYQR+VG+LIYLSH
Sbjct: 231 IFLSQRKYILDLLSEVGLLDCKPVDTPIVQNHQLGEYLDQVPSEKGRYQRVVGKLIYLSH 290
Query: 177 TRPDIAYSISVVSQFMHNPSEEHMKAVFRILRYLKKSLGKGLLFRKGGDMEVMGYTDADW 236
TRPDIAY++SVVSQFMHNPS +HMKAV RIL+YLK S GKGL+F K ++V GYTDADW
Sbjct: 291 TRPDIAYAVSVVSQFMHNPSTDHMKAVMRILQYLKSSPGKGLMFTKNDHLQVEGYTDADW 350
Query: 237 AGDITDRRSTSGYFTFVCGNMVTFRAKKQKVVARSSAESELRGMAQGVCELLWIRNILKD 296
AGD T+RRSTSGYFTFV GN+VT+R+KKQKVV+ SSAE+E RGMA+G+CELLWIR +L +
Sbjct: 351 AGDTTNRRSTSGYFTFVGGNLVTWRSKKQKVVSLSSAEAEFRGMAKGLCELLWIRRLLTE 410
Query: 297 LGFKLVKAMDLHCDNKAAIMIAHNLIQHDRMKHVEVDRFFIRENIDKGCICLPFVKSEDQ 356
+GF AM L CDNKAAI IAHN +QHDR KHVEVDR FI++N++ I PFVKSE+Q
Sbjct: 411 IGFTPSCAMKLFCDNKAAIAIAHNPVQHDRTKHVEVDRHFIKQNLETKIIQFPFVKSEEQ 470
Query: 357 LADILTKRVCGRIFNKAIDKLGMIDIYAPS 386
LADILTK VC + F+ ++ KLGM D+Y P+
Sbjct: 471 LADILTKAVCSKNFSNSLGKLGMRDLYVPT 500