BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0440.1
(695 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAP03364.1 putative polyprotein [Oryza sativa Japonica Group] 556 0.0
ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass... 556 0.0
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 507 e-161
>AAP03364.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 657
Score = 556 bits (1433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 271/427 (63%), Positives = 327/427 (76%), Gaps = 7/427 (1%)
Query: 242 RSSFKGKGDRVSEPLGLIHTDVCGPMSTLARGNYGYFITFTDDFTRYGYVYLMKHKSESF 301
++ F G+ +R SE L L++TD+CGPMS+ ARG++GYFITFTDDF+RYG VYLM+HKSESF
Sbjct: 237 QAPFTGQSERASELLALVYTDICGPMSSTARGSFGYFITFTDDFSRYGCVYLMRHKSESF 296
Query: 302 EVFKQFQNEVENQLGKKIKVIRSDRGGEYLSQEFEDHLRSCGIVSQLTPPGTPQMNGVSE 361
E FK+FQNEV+N LGK IK +RSDRGGEYLS EF +HL+ CGI+ QLTPPGTPQ N VSE
Sbjct: 297 EKFKEFQNEVQNNLGKTIKYLRSDRGGEYLSLEFGNHLKECGIIPQLTPPGTPQWNWVSE 356
Query: 362 RRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRASSKAVEKTPYEIWTGKVPKLSF 421
+RNRTL+DM+ L + P GY + R ++ + Y + ++ LS
Sbjct: 357 QRNRTLLDMLWKH-RLHEGPK---GYGVHLRGL---RGAAYILGIRIYRERSKRLIGLSQ 409
Query: 422 PKSGVAMFGRFKMEDSKRGFLPMTHGTTLSKTQCPRDPDELAHMKKVPYASAIGSIMYAM 481
+ RF M+ SK+GFLPM+HG L K QCP+ DE M +PYASAIG IMYAM
Sbjct: 410 STYIDKLLKRFNMQYSKKGFLPMSHGINLGKNQCPQATDERNKMSVIPYASAIGCIMYAM 469
Query: 482 VCTRPDVSYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDHFLVYGGKDELIAEGHVDA 541
+CTRPDVSYALS SRYQ +PGE HW A KNILKYLRRTKD FLVYGG++EL+ G+ DA
Sbjct: 470 LCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVVNGYTDA 529
Query: 542 SFQTDRDDFRSQSGYVFCLNGGAVSWKSSKQTTVADSTTEAEYLSASEAAKEGVWIKKFI 601
SFQTD+DDFRSQS +VFCLNGGAVSWKSSKQ TVADSTTEAEY++ASEAAK+ VWIKKF+
Sbjct: 530 SFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKKAVWIKKFV 589
Query: 602 SELGVVPSIENGVTLYCDNNGAIAQAKEPRAHQKSKHILRKYHVIREITERKDVVICKVD 661
S+LGV+ S + + L CDN+GAIAQAKEPR+HQKSKHIL +YH+IREI R DV ICK+
Sbjct: 590 SQLGVMTSASSPMDLCCDNSGAIAQAKEPRSHQKSKHILWRYHLIREIVGRGDVKICKIH 649
Query: 662 TDDNVAD 668
TD NVAD
Sbjct: 650 TDLNVAD 656
>ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 556 bits (1434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 271/427 (63%), Positives = 327/427 (76%), Gaps = 7/427 (1%)
Query: 242 RSSFKGKGDRVSEPLGLIHTDVCGPMSTLARGNYGYFITFTDDFTRYGYVYLMKHKSESF 301
++ F G+ +R SE L L++TD+CGPMS+ ARG++GYFITFTDDF+RYG VYLM+HKSESF
Sbjct: 347 QAPFTGQSERASELLALVYTDICGPMSSTARGSFGYFITFTDDFSRYGCVYLMRHKSESF 406
Query: 302 EVFKQFQNEVENQLGKKIKVIRSDRGGEYLSQEFEDHLRSCGIVSQLTPPGTPQMNGVSE 361
E FK+FQNEV+N LGK IK +RSDRGGEYLS EF +HL+ CGI+ QLTPPGTPQ N VSE
Sbjct: 407 EKFKEFQNEVQNNLGKTIKYLRSDRGGEYLSLEFGNHLKECGIIPQLTPPGTPQWNWVSE 466
Query: 362 RRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRASSKAVEKTPYEIWTGKVPKLSF 421
+RNRTL+DM+ L + P GY + R ++ + Y + ++ LS
Sbjct: 467 QRNRTLLDMLWKH-RLHEGPK---GYGVHLRGL---RGAAYILGIRIYRERSKRLIGLSQ 519
Query: 422 PKSGVAMFGRFKMEDSKRGFLPMTHGTTLSKTQCPRDPDELAHMKKVPYASAIGSIMYAM 481
+ RF M+ SK+GFLPM+HG L K QCP+ DE M +PYASAIG IMYAM
Sbjct: 520 STYIDKLLKRFNMQYSKKGFLPMSHGINLGKNQCPQATDERNKMSVIPYASAIGCIMYAM 579
Query: 482 VCTRPDVSYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDHFLVYGGKDELIAEGHVDA 541
+CTRPDVSYALS SRYQ +PGE HW A KNILKYLRRTKD FLVYGG++EL+ G+ DA
Sbjct: 580 LCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVVNGYTDA 639
Query: 542 SFQTDRDDFRSQSGYVFCLNGGAVSWKSSKQTTVADSTTEAEYLSASEAAKEGVWIKKFI 601
SFQTD+DDFRSQS +VFCLNGGAVSWKSSKQ TVADSTTEAEY++ASEAAK+ VWIKKF+
Sbjct: 640 SFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKKAVWIKKFV 699
Query: 602 SELGVVPSIENGVTLYCDNNGAIAQAKEPRAHQKSKHILRKYHVIREITERKDVVICKVD 661
S+LGV+ S + + L CDN+GAIAQAKEPR+HQKSKHIL +YH+IREI R DV ICK+
Sbjct: 700 SQLGVMTSASSPMDLCCDNSGAIAQAKEPRSHQKSKHILWRYHLIREIVGRGDVKICKIH 759
Query: 662 TDDNVAD 668
TD NVAD
Sbjct: 760 TDLNVAD 766
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 507 bits (1306), Expect = e-161, Method: Compositional matrix adjust.
Identities = 238/379 (62%), Positives = 296/379 (78%), Gaps = 2/379 (0%)
Query: 46 GAYVIEVNLANMADSPSWVYDTGCGAHIISELDELKEVRYLTKSEMVLRVANKARVAAVA 105
G VI+V LA+ + SWV+DTG AHI + + L + R + + EM LRV NKA+VAA++
Sbjct: 374 GINVIDVLLAD-SSVNSWVFDTGSVAHICNSMQSLTKNRRVARGEMDLRVGNKAKVAALS 432
Query: 106 VGTFELSLETGLILVLRNCYYVPTISRNIISASVLDKEGYHAIIKDKSCSLYKGEMFYTS 165
T L L +G I+ L NCYYVP +SRNIISAS L EGY II+D CS++ +MFY
Sbjct: 433 AETLPLVLPSGFIMELNNCYYVPAMSRNIISASCLMTEGYKFIIEDHGCSIFLNDMFYGY 492
Query: 166 AKLRNGLYVVNIEDE-ILNIDTKRLRTHDSNQSYLWHCRLGHINMKRMQKLHSDGLLGSC 224
A + NGL+++N++D I NI+ KRLR ++ N +++WHCRLGHI+ KRM+KLH DG+L S
Sbjct: 493 APVLNGLFILNLDDAPIFNINAKRLRPNNMNSTFIWHCRLGHISEKRMKKLHDDGILNSF 552
Query: 225 DLESYNTCEPCLVGKMTRSSFKGKGDRVSEPLGLIHTDVCGPMSTLARGNYGYFITFTDD 284
DLES+ TCE C++GKMT++ F G+ +R S+ L LIHTDVCGPMST ARG + YFITFTDD
Sbjct: 553 DLESFETCESCILGKMTKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDD 612
Query: 285 FTRYGYVYLMKHKSESFEVFKQFQNEVENQLGKKIKVIRSDRGGEYLSQEFEDHLRSCGI 344
++RYGY+YLM+HKSESFE FK+FQNEV+NQLGK IK +RSDRGGE+LSQEF +HL+ CGI
Sbjct: 613 YSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEFGNHLKQCGI 672
Query: 345 VSQLTPPGTPQMNGVSERRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRASSKAV 404
V QLTPP TPQ NGVSER NRTL+DMVR MM+ +DLP FWGYALETAAFTLNR SK+V
Sbjct: 673 VPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQSDLPLYFWGYALETAAFTLNRVPSKSV 732
Query: 405 EKTPYEIWTGKVPKLSFPK 423
+KTPYEIWTGK P LSF K
Sbjct: 733 DKTPYEIWTGKSPSLSFLK 751
Score = 410 bits (1055), Expect = e-125, Method: Compositional matrix adjust.
Identities = 188/263 (71%), Positives = 226/263 (85%)
Query: 431 RFKMEDSKRGFLPMTHGTTLSKTQCPRDPDELAHMKKVPYASAIGSIMYAMVCTRPDVSY 490
RF M+++K+GFLPM+HG + SK+Q P DE M +PYASAIGSIMYAM+CTR DVSY
Sbjct: 1051 RFNMQNTKKGFLPMSHGISPSKSQRPSTTDERDRMNGIPYASAIGSIMYAMICTRQDVSY 1110
Query: 491 ALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDHFLVYGGKDELIAEGHVDASFQTDRDDF 550
ALS+ SRYQ++PGE HWTA KNILKYLRRTKD FL+YGG +EL+ G+ DASFQTD+DD+
Sbjct: 1111 ALSVTSRYQADPGECHWTAVKNILKYLRRTKDAFLIYGGDEELVVNGYTDASFQTDKDDY 1170
Query: 551 RSQSGYVFCLNGGAVSWKSSKQTTVADSTTEAEYLSASEAAKEGVWIKKFISELGVVPSI 610
RSQSG+VF LNGGAVSWKSSKQ TVADSTT+AEY++ASEAAKEGVWI+ FI+ELGVVPS
Sbjct: 1171 RSQSGFVFILNGGAVSWKSSKQETVADSTTKAEYIAASEAAKEGVWIRNFIAELGVVPSA 1230
Query: 611 ENGVTLYCDNNGAIAQAKEPRAHQKSKHILRKYHVIREITERKDVVICKVDTDDNVADPL 670
+ + LYCDNNGAIAQAKEPR+HQKSKHILR+YH+IRE+ +R DV ICK+ TD NVADPL
Sbjct: 1231 SSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKIHTDLNVADPL 1290
Query: 671 TKPLPQPKYESHRRGIGIKRIDE 693
TKPL QPK+E+H R IGI+ +++
Sbjct: 1291 TKPLTQPKHEAHTRAIGIRYLND 1313