BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0650.1
(353 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010425323.1 PREDICTED: F-box protein At1g30790-like [Camelina... 67 6e-09
XP_006305072.1 hypothetical protein CARUB_v10009440mg [Capsella ... 65 4e-08
XP_004301822.1 PREDICTED: F-box/kelch-repeat protein At3g23880-l... 65 5e-08
>XP_010425323.1 PREDICTED: F-box protein At1g30790-like [Camelina sativa]
Length = 302
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 38/200 (19%)
Query: 28 LIFEVLTRLPVKTLLRFKTVCKKWCSLTQKDQNFIDSHLL-NRSRLRRLFIANPVSTMDG 86
LI E+L+RLP K+L+RFK+V K W S+ + ++ D+ L +R+R R LF + T
Sbjct: 30 LIIEILSRLPAKSLIRFKSVSKLWNSII-RSKDLTDAFLTRSRARPRLLFTFQHLETGQS 88
Query: 87 YSDEMTYWENQYDNKCESYITADLILVKDDKGNISATNVVVVDTVREVESISYDIILNPV 146
+ + +++ + + + A + D G + T S Y I +PV
Sbjct: 89 F----IFSAPEHEKEKDKTVVARHEMTITDFGFCTIT------------SSPYYITSSPV 132
Query: 147 NGLVCLSERDFQYGVRI--CNISTRELSQWFESSLLLDKKDCYRMQDYHYAEHSYQLGFD 204
NGLVC + G RI CN +TR QW +L K R+ H+ +LG+D
Sbjct: 133 NGLVCCTS-----GSRIAVCNPTTR---QW---CILPHVKPEGRVM------HA-RLGYD 174
Query: 205 PSNNEHKLVCLWNVCLKLRQ 224
P +E+K++C+ +C + R+
Sbjct: 175 PVGDEYKVLCVMMMCKRGRR 194
>XP_006305072.1 hypothetical protein CARUB_v10009440mg [Capsella rubella]
EOA37970.1 hypothetical protein CARUB_v10009440mg
[Capsella rubella]
Length = 381
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 33/187 (17%)
Query: 28 LIFEVLTRLPVKTLLRFKTVCKKWCSLTQKDQNFIDSHLLNRSRLRRLFIANPVSTMDGY 87
L E+L RLP K+L RF++V K WCS+ + Q + L+ SR R LF T +
Sbjct: 12 LTIEILLRLPAKSLFRFRSVSKTWCSIIRSRQFASEFMSLSLSRPRLLF------TFNNC 65
Query: 88 SDEMTYWENQYDNKCESYITADLILVKDDKGNISATNVVVVDTVREVESISYDIIL-NPV 146
D + + C Y+++ + K N +V+ S+DI+L N V
Sbjct: 66 CDTRLLFFSSPHQSC--YLSSSPSSMLASKKNFLTMPIVMS---------SFDIVLSNSV 114
Query: 147 NGLVCLSERDFQYGVRICNISTRELSQWFESSLLLDKKDCYRMQDYHYAEHSYQLGFDPS 206
G +C S R +CN +TR++ E+S D DCY LG+DPS
Sbjct: 115 RGFICSSLRG---KFVVCNPNTRQVIHLGENSFESD-YDCYM-----------YLGYDPS 159
Query: 207 NNEHKLV 213
N+++K++
Sbjct: 160 NDQYKVL 166
>XP_004301822.1 PREDICTED: F-box/kelch-repeat protein At3g23880-like [Fragaria
vesca subsp. vesca]
Length = 390
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 28 LIFEVLTRLPVKTLLRFKTVCKKWCSLTQKDQNFIDSHLLNRSRLRRLFIANPVSTMDGY 87
+I E+L RLP K+L+RF TVCK W S+ + +FID+HL R + + +G
Sbjct: 10 IIHEILLRLPAKSLVRFSTVCKSWSSMITRS-SFIDTHLKRRGQYNK---------QNGI 59
Query: 88 SDEMTYWENQYDNKCESYITADLILVKDDKGNISATNVVVVDTVREVESISYDIILNPVN 147
+ E+ C SY+ +KDD ++ T + SY ++ N
Sbjct: 60 V-HLLLCEHFTARSCTSYV------MKDDPAILTGDECYTKFTYPSIFKHSYASLIGTCN 112
Query: 148 GLVCLSERDFQYGVRICNISTRELSQWFESSLLLDKKDCYRMQDYHYAEHSYQLGFDPSN 207
GL+CL+ D +ST + ++L + H++ G+D +
Sbjct: 113 GLICLT--DHHSPRTTSKVSTIIWNPSIRKIVILPRPSIKSPTICMQTHHAFGFGYDAQS 170
Query: 208 NEHKLVCLWN-----VCLKLRQVNIWFVSESYSTQRN 239
N++K++ + + KLR+V E YS RN
Sbjct: 171 NDYKVLRILKSEDERLVTKLREV------EVYSLARN 201