BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0950.1
(184 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP62017.1 Retrovirus-related Pol polyprotein from transposon TN... 124 2e-32
CAN80206.1 hypothetical protein VITISV_039290 [Vitis vinifera] 129 3e-32
KYP31265.1 Retrovirus-related Pol polyprotein from transposon TN... 124 2e-30
>KYP62017.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 215
Score = 124 bits (312), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 51/201 (25%)
Query: 28 LAFEMLRRFQKNPEVIHWKAVKKVLRLYFHARK-------RSNILK-------------- 66
A +L R+Q NP V HWKA KKV+R Y K R++ L+
Sbjct: 13 FAVGVLGRYQSNPGVDHWKAAKKVMR-YLQGTKDFMLTYRRTDSLEVIGYSDSDFAGCID 71
Query: 67 ------------ECEAIT---------------DYIIACFDATQHAIWLKNFITKLYIVD 99
C A++ ++CF+AT H +WLK+FI+ L +VD
Sbjct: 72 TRKSTSGYVFMLACGAVSWSSRKQTLTATSTMEAEFVSCFEATSHGVWLKSFISGLRVVD 131
Query: 100 PVHKPMKIFFDNAIVVRFMGNGNPSKRRT-YIIVKYLDVRDKVEEGLIVILYISTKLMVA 158
+ KP+K++ DN+ + FM N S R+ +I +KYL +R++V+E +VI ++ST+LM+A
Sbjct: 132 SIAKPLKLYCDNSAAI-FMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHVSTELMIA 190
Query: 159 DPLTKGLPPKVYKELVSLMGV 179
DPLTKG+PPK +K+ V+ MG+
Sbjct: 191 DPLTKGMPPKNFKDHVTRMGL 211
>CAN80206.1 hypothetical protein VITISV_039290 [Vitis vinifera]
Length = 446
Score = 129 bits (323), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 37/189 (19%)
Query: 32 MLRRFQKNPEVIHWKAVKKVLRL------YFHARKRSNILK----------ECE----AI 71
ML R+Q NP + HWK VKKVLR Y +R++ L+ C+ +
Sbjct: 254 MLGRYQSNPGIDHWKVVKKVLRYLQGTKDYMLTYRRTDNLEIIGYSDFDYAGCKDTRKST 313
Query: 72 TDYI-----------------IACFDATQHAIWLKNFITKLYIVDPVHKPMKIFFDNAIV 114
+ YI +AC++AT HAIWL+NF+++L+++D + +P++I+ DN+
Sbjct: 314 SGYIFIHKQSLIASSTMEVEYVACYEATCHAIWLRNFVSRLHVIDSIMRPLRIYCDNSAA 373
Query: 115 VRFMGNGNPSKRRTYIIVKYLDVRDKVEEGLIVILYISTKLMVADPLTKGLPPKVYKELV 174
VRF N + +I +KYL VR+KV+ G++ I +I LM+ DPL KG PPK++ + V
Sbjct: 374 VRFSENNKTTGGSKHIDIKYLVVREKVQNGVVSIEHIKNTLMLXDPLXKGXPPKLFMDYV 433
Query: 175 SLMGVVESF 183
+ MG+V S
Sbjct: 434 ARMGLVASL 442
>KYP31265.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 425
Score = 124 bits (310), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 49/200 (24%)
Query: 28 LAFEMLRRFQKNPEVIHWKAVKKVLRLYFHARK--------------------------- 60
A +L R+Q NP V HWKA KKV+R Y K
Sbjct: 223 FAVGVLGRYQSNPGVDHWKAAKKVMR-YLQGTKDFMLIYRRTDSLEVIGYSDSDFAGCID 281
Query: 61 ---------------------RSNILKECEAITDYIIACFDATQHAIWLKNFITKLYIVD 99
R L + ++CF+AT H +WLK+FI+ L +VD
Sbjct: 282 TRKSTSGYVFMLACGAVSWSSRKQTLTATSTMEAEFVSCFEATSHGVWLKSFISGLRVVD 341
Query: 100 PVHKPMKIFFDNAIVVRFMGNGNPSKRRTYIIVKYLDVRDKVEEGLIVILYISTKLMVAD 159
+ KP+K++ DN+ V N R +I +KYL +R++V+E +VI ++ST+LM+AD
Sbjct: 342 SIAKPLKLYCDNSAAVFMAKNNKSGSRSKHIDIKYLVIRERVKEKKVVIEHVSTELMIAD 401
Query: 160 PLTKGLPPKVYKELVSLMGV 179
PLTKG+PPK +K+ V+ MG+
Sbjct: 402 PLTKGMPPKNFKDHVTRMGL 421