BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g1070.1
(305 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 103 6e-21
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 100 4e-20
XP_017609417.1 PREDICTED: uncharacterized protein LOC108455356 [... 97 4e-20
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 11/203 (5%)
Query: 65 KRAEPESM--TSRLLSAMEATLNEKPLNMEVPSITPKTEDSIRSKARVERFDTTSKLLRL 122
K+A ES+ + +L+AM + L ++ N+E + + ++AR +RF+ + L
Sbjct: 153 KKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTKRFEISKNLFSC 212
Query: 123 RLEKGKPVGPHVRQMIELFAKLEELGSPVSQSAANNMILYSLHEGFNLFKMEYAMNGWNK 182
+L +G PV PH+ +M+ LE+LG P+SQ A ++IL SL + F + + MNG +K
Sbjct: 213 KLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMNGLDK 272
Query: 183 PLEELDAMLQAAERLTMDLEPKNKILVAQENKRQKKKPALKGKGKRIA------KPQNK- 235
L EL +L+ AE + ++ + ++K + +KGKGK++ KP+ K
Sbjct: 273 NLTELHMLLKTAEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLDGIQTNKPKLKT 332
Query: 236 --GIQSTSRCFYCSGIGHWKETA 256
G + CFYC GHWK
Sbjct: 333 KSGPTQENECFYCKEPGHWKRNC 355
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 16/203 (7%)
Query: 65 KRAEPESM--TSRLLSAMEATLNEKPLNMEVPSITPKTEDSIRSKARVERFDTTSKLLRL 122
K+A ES+ + +L+AM + L ++ N+E + + ++AR ERF+ + L
Sbjct: 70 KKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTERFEISKNLFGC 129
Query: 123 RLEKGKPVGPHVRQMIELFAKLEELGSPVSQSAANNMILYSLHEGFNLFKMEYAMNGWNK 182
+L +G PV PHV +M+ LE+LG P+SQ A ++IL SL E + F + + MNG +K
Sbjct: 130 KLAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDLILASLPESYGQFILNFHMNGLDK 189
Query: 183 PLEELDAMLQAAERLTMDLEPKNKILVAQEN----KRQKKKPALKGKGK-----RIAKPQ 233
L EL ML+ AE N +++ Q++ K+ K KGK K + KP+
Sbjct: 190 NLTELHMMLKTAEGSVKKCN--NHVIMVQKSTSFKKKAKTWIKKKGKAKVSDKIQTDKPK 247
Query: 234 NK---GIQSTSRCFYCSGIGHWK 253
K G + CFYC +GHWK
Sbjct: 248 TKTKSGPTQENECFYCKELGHWK 270
>XP_017609417.1 PREDICTED: uncharacterized protein LOC108455356 [Gossypium
arboreum]
Length = 289
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 12/188 (6%)
Query: 76 LLSAMEATLNEKPLNMEVPSITPKTEDSIRSKARVERFDTTSKLLRLRLEKGKPVGPHVR 135
+L+ M L ++ +M + ++ + +AR +RFD + L + ++ +G PVGPHV
Sbjct: 78 MLATMNPELQKQHEDMVAYDMIDHLKELYQGQARQKRFDISKALFQCKMAEGSPVGPHVL 137
Query: 136 QMIELFAKLEELGSPVSQSAANNMILYSLHEGFNLFKMEYAMNGWNKPLEELDAMLQAAE 195
+MI L +LG P+SQ A ++IL SL + ++ F + + MN +K L +L +ML+ E
Sbjct: 138 KMIRYIESLFKLGFPLSQELATDVILQSLPDSYSQFVLNFNMNEIDKTLPQLLSMLRTVE 197
Query: 196 RLTMDLEPKNKILVAQENK-----RQKKKPALK-----GKGKRIAKPQNKGIQSTSRCFY 245
+ PK IL+ + NK + +KKP K GKGK KP++ G+ CF+
Sbjct: 198 GNMKRVRPK-PILMVRNNKGKGKAKVQKKPKGKGRPNSGKGKAALKPKS-GVSKEGNCFH 255
Query: 246 CSGIGHWK 253
GHWK
Sbjct: 256 YGVTGHWK 263