BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g1950.1
(184 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_016206738.1 PREDICTED: LOW QUALITY PROTEIN: alpha-L-arabinofu... 180 2e-49
KYP33202.1 Retrovirus-related Pol polyprotein from transposon TN... 163 7e-47
AAV88069.1 hypothetical retrotransposon [Ipomoea batatas] 169 1e-45
>XP_016206738.1 PREDICTED: LOW QUALITY PROTEIN: alpha-L-arabinofuranosidase 1-like
[Arachis ipaensis]
Length = 976
Score = 180 bits (457), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/182 (55%), Positives = 120/182 (65%), Gaps = 16/182 (8%)
Query: 1 MRTACYLINLSPSAPLDGDVAERVWAGKEVSYGHLRVFGYRAFVHIPKDQRAKLDDKAKQ 60
MRTA LINLS S PL+GDV E+VW GK+V Y HLRVF RAFVHIP+D+R+KLD K+KQ
Sbjct: 1 MRTAVDLINLSLSVPLNGDVPEKVWRGKDVFYSHLRVFDCRAFVHIPRDERSKLDGKSKQ 60
Query: 61 CIFLGYADEKFGYRLWDPVDKKIIKSRDVVFLENQTIEDFGKVEKHENHSNDLIDLDPHI 120
CIF+GY E FGYRLWDPV KKII+SRDV+FLE+QTIED K +K D +P
Sbjct: 61 CIFMGYGHEDFGYRLWDPVSKKIIRSRDVIFLEDQTIEDLKKTDKPTITVRRSADDEPGP 120
Query: 121 SSK-------VMHDNAGEEQNHEDEAHEDVPMGDDVEQEMEVQHEPPV--ELRRSTRERA 171
S + V DN G+ + E +VP + EV EPP+ ELRRSTRER
Sbjct: 121 SIRPPIDRGDVQVDNDGDNLHDELTPQPEVP-------DAEVLPEPPIESELRRSTRERH 173
Query: 172 PS 173
PS
Sbjct: 174 PS 175
>KYP33202.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 269
Score = 163 bits (412), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 128/198 (64%), Gaps = 29/198 (14%)
Query: 1 MRTACYLINLSPSAPLDGDVAERVWAGKEVSYGHLRVFGYRAFVHIPKDQRAKLDDKAKQ 60
+ TA ++INL+P+ L+ +V +++W GK SY HLRVFG +AFVHIP+D+R+KLD K +Q
Sbjct: 27 LYTAVHVINLTPTVILNSEVPDKIWFGKNASYDHLRVFGCKAFVHIPRDERSKLDTKTRQ 86
Query: 61 CIFLGYADEKFGYRLWDPVDKKIIKSRDVVFLENQTIEDFGKVEKH--ENHSNDLIDLDP 118
CIF+GY +++FGYR +DPV+KK++KSRDV F+E+QTIED KVEK EN N L D+DP
Sbjct: 87 CIFIGYGEDEFGYRFYDPVEKKLVKSRDVQFMEDQTIEDIDKVEKTTPENDRN-LTDVDP 145
Query: 119 -------------HISSKVMHDNAGEEQNHEDEAHEDVPMGDDVEQEMEVQH-------- 157
+ HD+ ++Q DVP+ DD ++E E+ H
Sbjct: 146 MWFPIHNLDNVDGSVQPSEQHDDVDDQQLG---GGLDVPIDDD-QEEHEMSHDENTDDAP 201
Query: 158 EP-PVELRRSTRERAPST 174
EP V+LRRS R+R PST
Sbjct: 202 EPHQVQLRRSNRQRQPST 219
>AAV88069.1 hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 169 bits (429), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 125/192 (65%), Gaps = 29/192 (15%)
Query: 3 TACYLINLSPSAPLDGDVAERVWAGKEVSYGHLRVFGYRAFVHIPKDQRAKLDDKAKQCI 62
TA ++INLSP L +V ++VW GK+VSY HLRVFG +AFVH+P+D+R+KLD K +QCI
Sbjct: 611 TAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCI 670
Query: 63 FLGYADEKFGYRLWDPVDKKIIKSRDVVFLENQTIEDFGKVEKHENH-SNDLIDLDPHIS 121
F+GY ++FGYRL+DPV+KK+++SRDVVF ENQTIED KV++ E+ S L+D++P +S
Sbjct: 671 FIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPESRDSGSLVDIEP-VS 729
Query: 122 SKVMHDNAGEEQNHEDEAHEDVPMGDD------------------VEQEMEVQHEPPVEL 163
+ D DE E+V GD V QE EV + PV+L
Sbjct: 730 RRYTDD--------VDEVQENVQNGDPVPDYQGDTVDVDGHADDVVHQEQEVPSQVPVDL 781
Query: 164 -RRSTRERAPST 174
RRS RER PST
Sbjct: 782 PRRSDRERRPST 793