BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2360.1
(280 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 387 e-125
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 388 e-125
BAA22288.1 polyprotein [Oryza australiensis] 395 e-125
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 387 bits (995), Expect = e-125, Method: Compositional matrix adjust.
Identities = 191/307 (62%), Positives = 225/307 (73%), Gaps = 28/307 (9%)
Query: 1 MLNSVKEWLWKCFLMKDLGDAEYILGIKIYRDKSRKMIGLSQETYIDKILGRFKMEDSKR 60
ML SVK L K F MKDLGDA YILGI+IYRD+S+++IGLSQE YIDK+L RF M++SKR
Sbjct: 584 MLESVKSSLRKSFSMKDLGDAAYILGIRIYRDRSKRLIGLSQEMYIDKVLNRFNMQNSKR 643
Query: 61 GFLPITHDTTVSKTQCPRDPDELAHMKKVPYASAIGSIMYAMVYTRPDVSYALSMCSRYQ 120
GFLP+ H +SK QCP DE M +PYASAIGSIMYAM+ TRPDVSYALS+ SRYQ
Sbjct: 644 GFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSYALSVTSRYQ 703
Query: 121 SNPGERHWTAAKNILKYLRRKKDHFL----------------------------SGYVFC 152
++P E HWTA KNILKYLRR KD FL SG+VF
Sbjct: 704 ADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFI 763
Query: 153 LNGGAVRWKNSKKTTVADSTTEAEYLAALEAAKEGVWMKKFISELGVLSSIKKGVTLYCD 212
LNGGAV WK+SK+ TVADSTTEAEY+AA EAAKEGVW++ FI+ELG++ S + LYCD
Sbjct: 764 LNGGAVSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSASSPMDLYCD 823
Query: 213 NNGAIAHTKEPRAHQKSKYIQRKYHVIREITERKDVVICKVDTDDNVAGPLTKPLPQPKF 272
NNGAIA KEPR+HQKSK+I R+YH+IRE+ +R DV ICKV TD N+A PLTKPL QPK
Sbjct: 824 NNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKVHTDLNIADPLTKPLTQPKH 883
Query: 273 ESLRRAL 279
E+ RA+
Sbjct: 884 EAHTRAI 890
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 388 bits (997), Expect = e-125, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 226/307 (73%), Gaps = 28/307 (9%)
Query: 1 MLNSVKEWLWKCFLMKDLGDAEYILGIKIYRDKSRKMIGLSQETYIDKILGRFKMEDSKR 60
+L SVK WL CF MKD+G+A YILGI+IYRD+ K+IGLSQ+TYIDK+L RF M DSK+
Sbjct: 651 LLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKK 710
Query: 61 GFLPITHDTTVSKTQCPRDPDELAHMKKVPYASAIGSIMYAMVYTRPDVSYALSMCSRYQ 120
GF+P++H T+SKTQCP DE M K+PYASAIGSIMYAM+YTRPDV+ ALSM SRYQ
Sbjct: 711 GFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQ 770
Query: 121 SNPGERHWTAAKNILKYLRRKKDHFL----------------------------SGYVFC 152
S+PGE HW +NI KYLRR KD FL SG+ FC
Sbjct: 771 SDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFC 830
Query: 153 LNGGAVRWKNSKKTTVADSTTEAEYLAALEAAKEGVWMKKFISELGVLSSIKKGVTLYCD 212
LNGGAV WK++K++TVADSTTEAEY+AA EAAKE VW++KFI+ELGV+ SI + LYCD
Sbjct: 831 LNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCD 890
Query: 213 NNGAIAHTKEPRAHQKSKYIQRKYHVIREITERKDVVICKVDTDDNVAGPLTKPLPQPKF 272
NNGAIA KEP++HQKSK+IQR+YH+IREI +R DV I +V TD NVA TKPLPQPK
Sbjct: 891 NNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKH 950
Query: 273 ESLRRAL 279
ES A+
Sbjct: 951 ESHTTAI 957
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 395 bits (1015), Expect = e-125, Method: Compositional matrix adjust.
Identities = 196/307 (63%), Positives = 229/307 (74%), Gaps = 28/307 (9%)
Query: 1 MLNSVKEWLWKCFLMKDLGDAEYILGIKIYRDKSRKMIGLSQETYIDKILGRFKMEDSKR 60
ML SVK L F MKDLG+A YILGI+IYRD+S+++IGLSQ TYIDK+L RF M DSK+
Sbjct: 1004 MLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKK 1063
Query: 61 GFLPITHDTTVSKTQCPRDPDELAHMKKVPYASAIGSIMYAMVYTRPDVSYALSMCSRYQ 120
GFLP++H +SK QCP+ DE M VPYASAIGSIMYAM+ TRPDVSYALS SRYQ
Sbjct: 1064 GFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQ 1123
Query: 121 SNPGERHWTAAKNILKYLRRKKDHFL----------------------------SGYVFC 152
S+PGE HWTA KNILKYLRR KD FL SG+VFC
Sbjct: 1124 SDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFC 1183
Query: 153 LNGGAVRWKNSKKTTVADSTTEAEYLAALEAAKEGVWMKKFISELGVLSSIKKGVTLYCD 212
LNGGAV WK+SK+ TVADSTTEAEY+AA EAAKE VW+KKF+SELGV++S ++LYCD
Sbjct: 1184 LNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCD 1243
Query: 213 NNGAIAHTKEPRAHQKSKYIQRKYHVIREITERKDVVICKVDTDDNVAGPLTKPLPQPKF 272
N+GAIA KEPR+HQKSK+I R+YH+IREI +R DV ICKV TD N+A PLTKPLPQPK
Sbjct: 1244 NSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKH 1303
Query: 273 ESLRRAL 279
E+ RA+
Sbjct: 1304 EAHTRAM 1310