BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2370.1
(226 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 281 2e-84
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 276 9e-84
AAM74249.1 Putative retroelement [Oryza sativa Japonica Group] 267 3e-82
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 281 bits (720), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 142/225 (63%), Positives = 174/225 (77%), Gaps = 9/225 (4%)
Query: 5 GDPPAQSELDSEENPQGVESVSPV--VQAPRRSARLIELSQR--QGILLVEDNEPSTYEK 60
G P+ S L E+N V PV APRRS R ++ R ILL+ ++EP+TY++
Sbjct: 742 GKSPSLSFLKDEQN-----IVEPVDEASAPRRSKRPCQMPIRYAHDILLLNNDEPNTYKE 796
Query: 61 AMTIPNSEKWLEAMKSEMESMSENQVWNLVDLSDGGEPIGCKWIFKIKTHKDGNVNVFKA 120
AM P+SEKWL AMKSE++SM +NQVWNLVD DG + I CKWI+K K DGNV++ KA
Sbjct: 797 AMMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMDGNVHIHKA 856
Query: 121 RLVAKGYRQVQGIEQEETFSPVAILKSIKIILAIAAHYDYEIWQMDVKTAFLNGNLEKDV 180
RLVAKG+RQVQG++ +ETFS VA+LKSI+IILAIAA++DYEIWQMDVKTAFLNG L +DV
Sbjct: 857 RLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDV 916
Query: 181 YMTQPEGFEESKNSGKVCKLQRSIYGLKQASRSWNLRFHEKIKEF 225
YMTQPEGF + N+ KVCKLQ+SIYGLKQASRSWN+RF E+IK F
Sbjct: 917 YMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRF 961
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 276 bits (707), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 168/231 (72%), Gaps = 13/231 (5%)
Query: 5 GDPPAQSELDSEENPQGVESVSPVVQAP--RRSARLIELSQR--------QGILLVEDNE 54
GD P E E V P++ P RRS R R + ++E +E
Sbjct: 385 GDVPTSQE---EHQLDLRRVVEPILVEPEVRRSERSRHEPDRFRDWVMDDHALFMIESDE 441
Query: 55 PSTYEKAMTIPNSEKWLEAMKSEMESMSENQVWNLVDLSDGGEPIGCKWIFKIKTHKDGN 114
P++YE+A+ P+S+KWLEA KSEMESMS+N+VW LVDL DG +PI CKWIFK K DGN
Sbjct: 442 PTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGN 501
Query: 115 VNVFKARLVAKGYRQVQGIEQEETFSPVAILKSIKIILAIAAHYDYEIWQMDVKTAFLNG 174
+ ++KA LVAKGY+QV GI+ +ET+SPVA+LKSI+I+LA AAHYDYEIWQMDVKTAFLNG
Sbjct: 502 IQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNG 561
Query: 175 NLEKDVYMTQPEGFEESKNSGKVCKLQRSIYGLKQASRSWNLRFHEKIKEF 225
NLE+ VYMTQPEGF + + KVCKL RSIYGLKQASRSWNLRF+E IKEF
Sbjct: 562 NLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEF 612
>AAM74249.1 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 267 bits (683), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 128/201 (63%), Positives = 161/201 (80%), Gaps = 8/201 (3%)
Query: 31 APRRSARLIELSQRQG--------ILLVEDNEPSTYEKAMTIPNSEKWLEAMKSEMESMS 82
A RRS R+ R ILL+ ++EP+TYE+AM P SEKWL AMKS++ESM
Sbjct: 317 ASRRSERIRRTPARYALLTTGQCDILLLGNDEPTTYEEAMVGPGSEKWLGAMKSKIESMH 376
Query: 83 ENQVWNLVDLSDGGEPIGCKWIFKIKTHKDGNVNVFKARLVAKGYRQVQGIEQEETFSPV 142
NQVWNLVD D + I CKW+FK KT DGNV+++KARLVAKG+RQ+QG+ +ETFSPV
Sbjct: 377 VNQVWNLVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPV 436
Query: 143 AILKSIKIILAIAAHYDYEIWQMDVKTAFLNGNLEKDVYMTQPEGFEESKNSGKVCKLQR 202
A+LKSI+I+LAIAA++DYEIWQMDVKTAFL+GNL++DVYMTQP+GF + +++ K+CKLQ+
Sbjct: 437 AMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQK 496
Query: 203 SIYGLKQASRSWNLRFHEKIK 223
SIYGLKQASRSWN+RF E IK
Sbjct: 497 SIYGLKQASRSWNIRFDEVIK 517