BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2480.1
(308 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AFB73912.1 polyprotein [Citrus sinensis] 357 e-110
KYP38095.1 Retrovirus-related Pol polyprotein from transposon TN... 355 e-110
KYP36645.1 Retrovirus-related Pol polyprotein from transposon TN... 352 e-109
>AFB73912.1 polyprotein [Citrus sinensis]
Length = 1309
Score = 357 bits (917), Expect = e-110, Method: Compositional matrix adjust.
Identities = 171/281 (60%), Positives = 205/281 (72%), Gaps = 4/281 (1%)
Query: 32 NNQPVENHEDDVGEEQVEEPLAQMQETQDRPQRTRHSPTWLKDYDT----TYACVADDRE 87
NN + + E + +EP+ R R R PTW +Y T Y + +D E
Sbjct: 732 NNPENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGE 791
Query: 88 PNSYQEACESVDASSWRASMEEEMEALYKNNTWTLVTLPPGRKAIGCRWVFKLKKDANGN 147
P+++ EA S+D + W +M+EE+EAL+KN TW LV LP GRKAIG +WV+K+K+D N
Sbjct: 792 PSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQ 851
Query: 148 VERYRARLVAKGYAQKSGIDFNEIFAPVVRMTTIRIVLSMAAVFDLELEQLDVKTAFLHG 207
VERYRARLV KGYAQK GIDFNEIF+PVVR+TT+RIVL+M A FDL LEQLDVKTAFLHG
Sbjct: 852 VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHG 911
Query: 208 NLDEEIYMTQPEGFVEEDKGNLVCQLNKSLYGLKQAPRCWYKRFDSFIVSLGFRRCEADH 267
L+EEIYM QPEGF E K NLVC+LNKSLYGLKQAPRCWYKRFDSFI+SLG+ R +DH
Sbjct: 912 ELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDH 971
Query: 268 CAYVCDIDNGSFIILLLYVDDMLIAGANKSSIANLKARLAR 308
CAY ++ FIILLLYVDDML+AG NK I LKA+LAR
Sbjct: 972 CAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAR 1012
>KYP38095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 355 bits (910), Expect = e-110, Method: Compositional matrix adjust.
Identities = 170/280 (60%), Positives = 202/280 (72%), Gaps = 8/280 (2%)
Query: 37 ENHEDDVGEEQVEEPLAQMQETQD----RPQRTRHSPTWLKDY----DTTYACVADDREP 88
++ EDD E + E + E D R R P+W DY Y + ++ EP
Sbjct: 680 KSKEDDTSEAEQEHDEQEPNEDNDGDVRRTTRQTKKPSWHSDYVMASHDAYCLLTEEGEP 739
Query: 89 NSYQEACESVDASSWRASMEEEMEALYKNNTWTLVTLPPGRKAIGCRWVFKLKKDANGNV 148
+++QEA S D S W A+M EE+EAL++N TW LV LP GRKAIGC+WV+K+K+D N V
Sbjct: 740 STFQEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQV 799
Query: 149 ERYRARLVAKGYAQKSGIDFNEIFAPVVRMTTIRIVLSMAAVFDLELEQLDVKTAFLHGN 208
ERYRARLV KGYAQK GIDFNEIF+PVVR+TTIR+VL+M A F+L LEQLDVKTAFLHG
Sbjct: 800 ERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGE 859
Query: 209 LDEEIYMTQPEGFVEEDKGNLVCQLNKSLYGLKQAPRCWYKRFDSFIVSLGFRRCEADHC 268
L EEIYM QPEGF E+ K NLVC+L KSLYGLKQAPRCWYKRFDSFI+SLG+ R +DHC
Sbjct: 860 LQEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHC 919
Query: 269 AYVCDIDNGSFIILLLYVDDMLIAGANKSSIANLKARLAR 308
Y D+ FIILLLYVDDML+ G NK I LKA+LAR
Sbjct: 920 TYYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAR 959
>KYP36645.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 352 bits (904), Expect = e-109, Method: Compositional matrix adjust.
Identities = 163/250 (65%), Positives = 192/250 (76%), Gaps = 4/250 (1%)
Query: 63 QRTRHSPTWLKDY----DTTYACVADDREPNSYQEACESVDASSWRASMEEEMEALYKNN 118
+R R P+W DY Y + ++ EP+++QEA S D S W A+M EE+EAL++N
Sbjct: 710 RRERRRPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNK 769
Query: 119 TWTLVTLPPGRKAIGCRWVFKLKKDANGNVERYRARLVAKGYAQKSGIDFNEIFAPVVRM 178
TW LV LP GRKAIGC+WV+K+K+D N VERYRARLV KGYAQK GIDFNEIF+PVVR+
Sbjct: 770 TWELVDLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRL 829
Query: 179 TTIRIVLSMAAVFDLELEQLDVKTAFLHGNLDEEIYMTQPEGFVEEDKGNLVCQLNKSLY 238
TTIR+VL+M A F+L LEQLDVKTAFLHG L EEIYM QPEGF E+ K NLVC+L KSLY
Sbjct: 830 TTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLY 889
Query: 239 GLKQAPRCWYKRFDSFIVSLGFRRCEADHCAYVCDIDNGSFIILLLYVDDMLIAGANKSS 298
GLKQAPRCWYKRFDSFI+SLG+ R +DHC Y D+ FIILLLYVDDML+ G NK
Sbjct: 890 GLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQ 949
Query: 299 IANLKARLAR 308
I LKA+LAR
Sbjct: 950 IQELKAQLAR 959