BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3250.1
(480 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 675 0.0
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 662 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 636 0.0
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/469 (68%), Positives = 376/469 (80%), Gaps = 32/469 (6%)
Query: 36 FQSKIDKDGNVKVFKTRLVAKGYKQIQSIDYDETFSPIAMLKSIRIILGIAAHYDYEIWQ 95
F+ K D DGNV ++K RLVAKG+KQIQ +DYDETFSP+AMLKSIRIIL IAA++DYEIWQ
Sbjct: 845 FKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQ 904
Query: 96 MDVKTAFLNGYLEEDVYMTHPEGFVDSKNAGKVCKLNKSIYGLKQASRSWNLRFDEKIKE 155
MDVKTAFLNG L EDVYM P+GFVD ++ GK+CKL KSIYGLKQASRSWN+RFDE IK
Sbjct: 905 MDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKG 964
Query: 156 FGFLKNAEESFIYKKVIGSNLVFLVLYVDDILIIGNNIPMLESIKDGLRKCFSMKDLGEA 215
FGF+KN EE+ +YKKV GS +VFL+LYVDDIL+IGN+IPMLES+K L+ FSMKDLGEA
Sbjct: 965 FGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEA 1024
Query: 216 EYILGIKIYRDRSRRMIGLSQETYIDKILQRFEVTNSKRGFLPMIHGIVLSKDQCPMSPD 275
YILGI+IYRDRS+R+IGLSQ TYIDK+L+RF + +SK+GFLPM HGI LSK+QCP + D
Sbjct: 1025 AYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHD 1084
Query: 276 ELAHMMKIPYASAIGSIMYTMICTRPDVSYTLSKCSRYQSNPGEAHWCAAKNIL------ 329
E M +PYASAIGSIMY M+CTRPDVSY LS SRYQS+PGE HW A KNIL
Sbjct: 1085 ERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRT 1144
Query: 330 --------------------------KDDFKSQSGYVYFLNGGAVSWKSSKQSTIADSTT 363
KDD++SQSG+V+ LNGGAVSWKSSKQ T+ADSTT
Sbjct: 1145 KDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTT 1204
Query: 364 EAEYLTASEAAKEGVWIKKFMIELGVVPGIEEGVTLYCDNSGAIAQAKEPRAHQKSKHIQ 423
EAEY+ ASEAAKE VWIKKF+ ELGV+ ++LYCDNSGAIAQAKEPR+HQKSKHI
Sbjct: 1205 EAEYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHIL 1264
Query: 424 RKYHLIREIIERKDVVICKVHTDDNVANPLTKPLPQPKHDSHMRGIGIK 472
R+YHLIREI++R DV ICKVHTD N+A+PLTKPLPQPKH++H R +GI+
Sbjct: 1265 RRYHLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIR 1313
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/473 (67%), Positives = 369/473 (78%), Gaps = 32/473 (6%)
Query: 36 FQSKIDKDGNVKVFKTRLVAKGYKQIQSIDYDETFSPIAMLKSIRIILGIAAHYDYEIWQ 95
++ KID DGNV + K RLVAKG++Q+Q +DYDETFS +AMLKSIRIIL IAA++DYEIWQ
Sbjct: 841 YKKKIDMDGNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQ 900
Query: 96 MDVKTAFLNGYLEEDVYMTHPEGFVDSKNAGKVCKLNKSIYGLKQASRSWNLRFDEKIKE 155
MDVKTAFLNG L EDVYMT PEGFVD NA KVCKL KSIYGLKQASRSWN+RFDE+IK
Sbjct: 901 MDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKR 960
Query: 156 FGFLKNAEESFIYKKVIGSNLVFLVLYVDDILIIGNNIPMLESIKDGLRKCFSMKDLGEA 215
FGF+KN EE +Y KV GS LV L+LYVDDIL+IGN+IPMLES+K L+ FSMKDLGEA
Sbjct: 961 FGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEA 1020
Query: 216 EYILGIKIYRDRSRRMIGLSQETYIDKILQRFEVTNSKRGFLPMIHGIVLSKDQCPMSPD 275
YILGIKIYRDRSRR+IGLSQ TYIDK+L RF + N+K+GFLPM HGI SK Q P + D
Sbjct: 1021 AYILGIKIYRDRSRRLIGLSQSTYIDKVLIRFNMQNTKKGFLPMSHGISPSKSQRPSTTD 1080
Query: 276 ELAHMMKIPYASAIGSIMYTMICTRPDVSYTLSKCSRYQSNPGEAHWCAAKNIL------ 329
E M IPYASAIGSIMY MICTR DVSY LS SRYQ++PGE HW A KNIL
Sbjct: 1081 ERDRMNGIPYASAIGSIMYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRT 1140
Query: 330 --------------------------KDDFKSQSGYVYFLNGGAVSWKSSKQSTIADSTT 363
KDD++SQSG+V+ LNGGAVSWKSSKQ T+ADSTT
Sbjct: 1141 KDAFLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTT 1200
Query: 364 EAEYLTASEAAKEGVWIKKFMIELGVVPGIEEGVTLYCDNSGAIAQAKEPRAHQKSKHIQ 423
+AEY+ ASEAAKEGVWI+ F+ ELGVVP + LYCDN+GAIAQAKEPR+HQKSKHI
Sbjct: 1201 KAEYIAASEAAKEGVWIRNFIAELGVVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHIL 1260
Query: 424 RKYHLIREIIERKDVVICKVHTDDNVANPLTKPLPQPKHDSHMRGIGIKRIGE 476
R+YHLIRE+++R DV ICK+HTD NVA+PLTKPL QPKH++H R IGI+ + +
Sbjct: 1261 RRYHLIRELVDRGDVKICKIHTDLNVADPLTKPLTQPKHEAHTRAIGIRYLND 1313
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/471 (65%), Positives = 364/471 (77%), Gaps = 32/471 (6%)
Query: 36 FQSKIDKDGNVKVFKTRLVAKGYKQIQSIDYDETFSPIAMLKSIRIILGIAAHYDYEIWQ 95
F+ KID DGN++++K LVAKGYKQ+ IDYDET+SP+AMLKSIRI+L AAHYDYEIWQ
Sbjct: 492 FKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQ 551
Query: 96 MDVKTAFLNGYLEEDVYMTHPEGFVDSKNAGKVCKLNKSIYGLKQASRSWNLRFDEKIKE 155
MDVKTAFLNG LEE VYMT PEGF + A KVCKL++SIYGLKQASRSWNLRF+E IKE
Sbjct: 552 MDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKE 611
Query: 156 FGFLKNAEESFIYKKVIGSNLVFLVLYVDDILIIGNNIPMLESIKDGLRKCFSMKDLGEA 215
F F++N EE +YKK GS + FLVLYVDDIL++GN+IP+L+S+K L CFSMKD+GEA
Sbjct: 612 FDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEA 671
Query: 216 EYILGIKIYRDRSRRMIGLSQETYIDKILQRFEVTNSKRGFLPMIHGIVLSKDQCPMSPD 275
YILGI+IYRDR ++IGLSQ+TYIDK+L RF + +SK+GF+PM HGI LSK QCP + D
Sbjct: 672 AYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHD 731
Query: 276 ELAHMMKIPYASAIGSIMYTMICTRPDVSYTLSKCSRYQSNPGEAHWCAAKNIL------ 329
E M KIPYASAIGSIMY M+ TRPDV+ LS SRYQS+PGE+HW +NI
Sbjct: 732 ERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRT 791
Query: 330 --------------------------KDDFKSQSGYVYFLNGGAVSWKSSKQSTIADSTT 363
KDDF+SQSG+ + LNGGAVSWKS+KQST+ADSTT
Sbjct: 792 KDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTT 851
Query: 364 EAEYLTASEAAKEGVWIKKFMIELGVVPGIEEGVTLYCDNSGAIAQAKEPRAHQKSKHIQ 423
EAEY+ ASEAAKE VWI+KF+ ELGVVP I + LYCDN+GAIAQAKEP++HQKSKHIQ
Sbjct: 852 EAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQ 911
Query: 424 RKYHLIREIIERKDVVICKVHTDDNVANPLTKPLPQPKHDSHMRGIGIKRI 474
R+YHLIREII+R DV I +V TD NVA+ TKPLPQPKH+SH IGI+ I
Sbjct: 912 RRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKHESHTTAIGIRFI 962