BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3290.1
(403 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_009144587.1 PREDICTED: putative ribonuclease H protein At1g65... 119 6e-27
XP_013746247.1 PREDICTED: uncharacterized protein LOC106448985 [... 115 4e-24
XP_013700461.1 PREDICTED: uncharacterized protein LOC106404277 [... 113 1e-23
>XP_009144587.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 357
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 108/200 (54%), Gaps = 5/200 (2%)
Query: 1 MMTSARIRRSEWVKRNLIRGKNFWTMKTPSSCSWCWRRILGSRDLARNLVQYVIHDGRNT 60
+ T + +WVK+ L+RG +FW +K S+ SW W+++L R +A+ ++ IHDG+
Sbjct: 114 LFTDSESLWGKWVKQTLLRGVSFWDVKEGSTGSWVWKKLLQLRPVAQRFLKMDIHDGKLV 173
Query: 61 FFWRDIWHPSGSLADRFSVFHQVDSSLREEALVSDFLVNGQWVCSDQLRYDLGSVFDSMQ 120
FW DIWHP G L + ++ + A ++D LV W + ++ +Q
Sbjct: 174 KFWTDIWHPIGRLIEIVGDRGRLKLGIAISACIADVLVENVWRFRRTRDTTVQNMIVKVQ 233
Query: 121 E--VEVGGLIADTVVWKIT---TSGEYTVKDTYNSIRRKGPKVPWTNLVWCHEGVPKHSF 175
E VE+ + D V+WK E++ T+ IR K P V W+ L+W +GVP+++F
Sbjct: 234 ELGVELETNVQDEVLWKRKDDENGREFSAATTWEHIRCKRPVVVWSKLIWFAQGVPRYAF 293
Query: 176 ITWITLKRGLKTKAKLRGWG 195
I W+ +K L T +K+R WG
Sbjct: 294 IAWLAVKDRLSTGSKMRAWG 313
>XP_013746247.1 PREDICTED: uncharacterized protein LOC106448985 [Brassica napus]
Length = 1526
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 10/192 (5%)
Query: 11 EWVKRNLIRGKNFWTMKTPSSCSWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHPS 70
+WV+R L+R FW +K SW WR++L R +A+ ++Y ++DG FW DIWHP
Sbjct: 1205 KWVRRFLLREYTFWDVKDTGLGSWVWRKLLRIRSMAKRFLRYEVNDGNTARFWTDIWHPR 1264
Query: 71 GSLADRFSVFHQVDSSLREEALVSDFLVNGQW---VCSDQLRYDLGSVFDSMQEVEVGGL 127
G L + + +R EA +S+ G W C D L ++ + E G
Sbjct: 1265 GRLIEVAGEVNTQRLGIRREARISEVFREGLWHFRRCRDPQLLSLIVDIEAFKVCETDG- 1323
Query: 128 IADTVVWKITTSGEYTVK----DTYNSIRRKGPKVPWTNLVWCHEGVPKHSFITWITLKR 183
D V+WK + G Y K +T++ IR+ KV W+ LVW +G+P+++FITW+ ++
Sbjct: 1324 -RDAVLWK-SKDGNYGPKFVASETWHQIRQSKEKVNWSKLVWFSQGIPRYAFITWLAIRD 1381
Query: 184 GLKTKAKLRGWG 195
L T + WG
Sbjct: 1382 RLSTGRRTSSWG 1393
>XP_013700461.1 PREDICTED: uncharacterized protein LOC106404277 [Brassica napus]
Length = 1050
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 5/191 (2%)
Query: 11 EWVKRNLIRGKNFWTMKTPSSCSWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHPS 70
+WVK+ ++RG++FW + + SW W+++L R LA+ + + +G+ FW DIW P
Sbjct: 787 QWVKQTILRGESFWDARVGAVGSWVWKKLLQLRPLAKQFLCMEVRNGKTVGFWTDIWLPI 846
Query: 71 GSLADRFSVFHQVDSSLREEALVSDFLVNGQWVCSDQLRYDLGSVFDSMQE--VEVGGLI 128
G L + + A ++D LVN QW + + V ++ + + +
Sbjct: 847 GRLIEVIGERGTQKLGIVRNAKIADVLVNDQWRFRNSRDSSIEQVLAQVKAKPLVLAPNV 906
Query: 129 ADTVVWK---ITTSGEYTVKDTYNSIRRKGPKVPWTNLVWCHEGVPKHSFITWITLKRGL 185
D V WK + E++ T+N +R + KVPW L+W +GVP+++F+TW+ +K L
Sbjct: 907 DDGVKWKRGDVEYGSEFSAYRTWNMVRGQNTKVPWAKLIWFKQGVPRYAFVTWLAVKDRL 966
Query: 186 KTKAKLRGWGL 196
T ++++ WG+
Sbjct: 967 STGSRMQTWGV 977
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 11 EWVKRNLIRGKNFWTMKTPSSCSWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHPS 70
+WVK+ ++RG++FW + + SW W+++L R LA+ + + +G+ FW DIW P
Sbjct: 676 QWVKQTILRGESFWDARVGAVGSWVWKKLLQLRPLAKQFLCMEVRNGKTVGFWTDIWFPI 735
Query: 71 GSLAD 75
G L +
Sbjct: 736 GRLIE 740