BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3850.1
(154 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 199 2e-56
ABA99022.2 retrotransposon protein, putative, Ty1-copia subclass... 194 3e-55
AAP52343.2 retrotransposon protein, putative, Ty1-copia subclass... 191 6e-55
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 199 bits (505), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/148 (66%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Query: 1 MLKSISIILVIAAHY--EIWQMDVKTAFLNGNLEEDVYMTQHEGFIDSKSAKKVSKIQRY 58
MLKSI I+L AAHY EIWQMDVKTAFLNGNLEE VYMTQ EGF ++A+KV K+ R
Sbjct: 531 MLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRS 590
Query: 59 IYGLKQASRSWNLRFEEAIIEFFFSMNEDESCVYKKVSGSDLVFVAMYVGDILLIRNIIL 118
IYGLKQASRSWNLRF EAI EF F NE+E CVYKK SGS + F+ +YV DILL+ N I
Sbjct: 591 IYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIP 650
Query: 119 ILKSVKDWLRKCFSMNNLRDAEYILGSR 146
+L+SVK WL CFSM ++ +A YILG R
Sbjct: 651 LLQSVKTWLGSCFSMKDMGEAAYILGIR 678
>ABA99022.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 194 bits (494), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 118/148 (79%), Gaps = 2/148 (1%)
Query: 1 MLKSISIILVIAAH--YEIWQMDVKTAFLNGNLEEDVYMTQHEGFIDSKSAKKVSKIQRY 58
MLKSI I+L IAA+ YEIWQMDVKT FLNGNL+EDVYMTQ +GF+D +SAKK+ K+Q+
Sbjct: 669 MLKSIRIVLAIAAYFNYEIWQMDVKTTFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKS 728
Query: 59 IYGLKQASRSWNLRFEEAIIEFFFSMNEDESCVYKKVSGSDLVFVAMYVGDILLIRNIIL 118
IYGLKQASRSWN+RF+E + F NE+E CVYKK+SGS LVF+ +YV DILLI N IL
Sbjct: 729 IYGLKQASRSWNIRFDEVVKALRFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIL 788
Query: 119 ILKSVKDWLRKCFSMNNLRDAEYILGSR 146
+L+SVK L+ FSM +L +A YILG R
Sbjct: 789 MLESVKTSLKNRFSMKDLGEAAYILGIR 816
>AAP52343.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 191 bits (486), Expect = 6e-55, Method: Composition-based stats.
Identities = 95/148 (64%), Positives = 118/148 (79%), Gaps = 2/148 (1%)
Query: 1 MLKSISIILVIAAH--YEIWQMDVKTAFLNGNLEEDVYMTQHEGFIDSKSAKKVSKIQRY 58
MLKSI I+L IAA+ YEIWQMDVKTAFL+GNL+EDVYMTQ +GF+D +SAKK+ K+Q+
Sbjct: 393 MLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKS 452
Query: 59 IYGLKQASRSWNLRFEEAIIEFFFSMNEDESCVYKKVSGSDLVFVAMYVGDILLIRNIIL 118
IYGLKQASRSWN+RF+E I F NE+E CVYKK++GS L+F+ +YV DILLI N I
Sbjct: 453 IYGLKQASRSWNIRFDEVIKALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIP 512
Query: 119 ILKSVKDWLRKCFSMNNLRDAEYILGSR 146
+L+SVK L+ FSM +L +A YILG R
Sbjct: 513 MLESVKTSLKNSFSMKDLGEAAYILGIR 540