BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000084.1_g0010.1
(428 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 644 0.0
BAA22288.1 polyprotein [Oryza australiensis] 651 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 635 0.0
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/419 (72%), Positives = 346/419 (82%)
Query: 10 AIASHYDYEIWQMDVKTAFLNRNMEEDVYMKQPEGFVDSNNARKVCKLQRFIYGLNKASW 69
AIA+++DYEIWQMDVKTAFLN N+ EDVYM QPEGFVD NNA KVCKLQ+ IYGL +AS
Sbjct: 473 AIAAYFDYEIWQMDVKTAFLNGNLHEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASR 532
Query: 70 SWNLRFDEKIKEFGFLKNEEESCVYKKVSGSNLVFLVLYVDDILIIRKNILMLNSVKEWL 129
SWN+RFDE+IK FGF+KN+EE CVY KVSGS LV L+LYVDDIL++ +I ML SVK L
Sbjct: 533 SWNIRFDEEIKRFGFIKNKEEPCVYMKVSGSTLVILILYVDDILLVGNDIPMLESVKSSL 592
Query: 130 RKCFSMKDLGDAEYILGIKIYRDRSKKMIGLSQETYIDKILKRFKMETSKRGFIPMAHGT 189
RK FSMKDLGDA YILGI+IYRDRSK++IGLSQE YIDK+L RF M+ SKRGF+PMAHG
Sbjct: 593 RKSFSMKDLGDAAYILGIRIYRDRSKRLIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGI 652
Query: 190 VLSKTQSPSDPRELANMQKVPYASAIGSIMYAMTCTRPDVSYALSMCSRYQSNPGEDHWA 249
LSK Q P+ E M +PYASAIGSIMYAM CTRPDVSYALS+ SRYQ++P E HW
Sbjct: 653 NLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSYALSVTSRYQADPSEGHWT 712
Query: 250 AAKNILKYLRRTKDHLLVYGGKKELIVEGSVDASFQTDKDDCRSQSGHVFCLNGGVVCWK 309
A KNILKYLRRTKD LVYGG +EL+V G DASFQTDKDD RSQSG VF LNGG V WK
Sbjct: 713 AVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWK 772
Query: 310 SSKQTTVVDSTTEAEYLAASEVAKEGVWMKKFIPGLGVVPSIEKGITLHCDNNGAIAQAK 369
SSKQ TV DSTTEAEY+AASE AKEGVW++ FI LG+VPS + L+CDNNGAIAQAK
Sbjct: 773 SSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSASSPMDLYCDNNGAIAQAK 832
Query: 370 EPRAHQKSKHIQRKYHLIREIIRRKDVVICKVHTDDNIADPLTKPLPRPKHESYTKGWG 428
EPR+HQKSKHI R+YHLIRE++ R DV ICKVHTD NIADPLTKPL +PKHE++T+ G
Sbjct: 833 EPRSHQKSKHILRRYHLIRELVDRGDVKICKVHTDLNIADPLTKPLTQPKHEAHTRAIG 891
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/428 (72%), Positives = 356/428 (83%)
Query: 1 MLKSIRIILAIASHYDYEIWQMDVKTAFLNRNMEEDVYMKQPEGFVDSNNARKVCKLQRF 60
MLKSIRIILAIA+++DYEIWQMDVKTAFLN N+ EDVYM QP+GFVD + K+CKLQ+
Sbjct: 884 MLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKS 943
Query: 61 IYGLNKASWSWNLRFDEKIKEFGFLKNEEESCVYKKVSGSNLVFLVLYVDDILIIRKNIL 120
IYGL +AS SWN+RFDE IK FGF+KNEEE+CVYKKVSGS +VFL+LYVDDIL+I +I
Sbjct: 944 IYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIP 1003
Query: 121 MLNSVKEWLRKCFSMKDLGDAEYILGIKIYRDRSKKMIGLSQETYIDKILKRFKMETSKR 180
ML SVK L+ FSMKDLG+A YILGI+IYRDRSK++IGLSQ TYIDK+LKRF M SK+
Sbjct: 1004 MLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKK 1063
Query: 181 GFIPMAHGTVLSKTQSPSDPRELANMQKVPYASAIGSIMYAMTCTRPDVSYALSMCSRYQ 240
GF+PM+HG LSK Q P E M VPYASAIGSIMYAM CTRPDVSYALS SRYQ
Sbjct: 1064 GFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQ 1123
Query: 241 SNPGEDHWAAAKNILKYLRRTKDHLLVYGGKKELIVEGSVDASFQTDKDDCRSQSGHVFC 300
S+PGE HW A KNILKYLRRTKD LVYGG+++L+V G DASFQTDKDD RSQSG VFC
Sbjct: 1124 SDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFC 1183
Query: 301 LNGGVVCWKSSKQTTVVDSTTEAEYLAASEVAKEGVWMKKFIPGLGVVPSIEKGITLHCD 360
LNGG V WKSSKQ TV DSTTEAEY+AASE AKE VW+KKF+ LGV+ S ++L+CD
Sbjct: 1184 LNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCD 1243
Query: 361 NNGAIAQAKEPRAHQKSKHIQRKYHLIREIIRRKDVVICKVHTDDNIADPLTKPLPRPKH 420
N+GAIAQAKEPR+HQKSKHI R+YHLIREI+ R DV ICKVHTD NIADPLTKPLP+PKH
Sbjct: 1244 NSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKH 1303
Query: 421 ESYTKGWG 428
E++T+ G
Sbjct: 1304 EAHTRAMG 1311
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/428 (71%), Positives = 345/428 (80%)
Query: 1 MLKSIRIILAIASHYDYEIWQMDVKTAFLNRNMEEDVYMKQPEGFVDSNNARKVCKLQRF 60
MLKSIRI+LA A+HYDYEIWQMDVKTAFLN N+EE VYM QPEGF ARKVCKL R
Sbjct: 531 MLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRS 590
Query: 61 IYGLNKASWSWNLRFDEKIKEFGFLKNEEESCVYKKVSGSNLVFLVLYVDDILIIRKNIL 120
IYGL +AS SWNLRF+E IKEF F++NEEE CVYKK SGS + FLVLYVDDIL++ +I
Sbjct: 591 IYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIP 650
Query: 121 MLNSVKEWLRKCFSMKDLGDAEYILGIKIYRDRSKKMIGLSQETYIDKILKRFKMETSKR 180
+L SVK WL CFSMKD+G+A YILGI+IYRDR K+IGLSQ+TYIDK+L RF M SK+
Sbjct: 651 LLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKK 710
Query: 181 GFIPMAHGTVLSKTQSPSDPRELANMQKVPYASAIGSIMYAMTCTRPDVSYALSMCSRYQ 240
GFIPM+HG LSKTQ PS E M K+PYASAIGSIMYAM TRPDV+ ALSM SRYQ
Sbjct: 711 GFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQ 770
Query: 241 SNPGEDHWAAAKNILKYLRRTKDHLLVYGGKKELIVEGSVDASFQTDKDDCRSQSGHVFC 300
S+PGE HW +NI KYLRRTKD LVYGG +EL+V G DASFQTDKDD RSQSG FC
Sbjct: 771 SDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFC 830
Query: 301 LNGGVVCWKSSKQTTVVDSTTEAEYLAASEVAKEGVWMKKFIPGLGVVPSIEKGITLHCD 360
LNGG V WKS+KQ+TV DSTTEAEY+AASE AKE VW++KFI LGVVPSI I L+CD
Sbjct: 831 LNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCD 890
Query: 361 NNGAIAQAKEPRAHQKSKHIQRKYHLIREIIRRKDVVICKVHTDDNIADPLTKPLPRPKH 420
NNGAIAQAKEP++HQKSKHIQR+YHLIREII R DV I +V TD N+AD TKPLP+PKH
Sbjct: 891 NNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKH 950
Query: 421 ESYTKGWG 428
ES+T G
Sbjct: 951 ESHTTAIG 958