BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0180.1
(374 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_013662913.1 PREDICTED: uncharacterized protein LOC106367640 [... 103 8e-21
XP_013669450.1 PREDICTED: uncharacterized protein LOC106373880 [... 94 2e-17
XP_009119675.1 PREDICTED: putative ribonuclease H protein At1g65... 93 6e-17
>XP_013662913.1 PREDICTED: uncharacterized protein LOC106367640 [Brassica napus]
Length = 476
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 50/320 (15%)
Query: 77 RSMVISTIAATENGEDTIRWHLTKSGNYTINFMYHNLRTTRYATQ-NDVIE------LFF 129
+ +++T +GEDT W TK+G+YT+ Y ++ Q N+ ++ LF
Sbjct: 82 KEQILATNIQGSHGEDTYYWEYTKTGHYTVKSGYWVQQSINKPDQSNETVDRPSLDGLFQ 141
Query: 130 -IWKINTTHRIKLFLWKCCTNSLSIRDKI-GKYIGNNYKCPNYN---NNETIDHALLHRV 184
IWK+NT+ ++ FLWKC ++SL + ++I + C Y NETI+H L
Sbjct: 142 QIWKMNTSPKVHHFLWKCLSDSLPAAANMRNRHIAKDGSCGRYAMEVENETINHILFTCP 201
Query: 185 HARSIWFYF-------NILTDD--TNTVRDWMLQWKD----LDDDLVNLYAKILWLILKA 231
+AR IW +L+D N R L+ +D + DDLV +LW I K
Sbjct: 202 YARLIWALSPIHAPTNGVLSDSLYANLARVMNLKHQDPTEKVYDDLVPW---LLWRIWKN 258
Query: 232 RCEKCFSKQIQTPTHVINKIKATSTKPLK--------TNTRADNKRYHFWRPPSAPYLKI 283
R E F TP ++K + + LK NT + ++H W+PP ++K
Sbjct: 259 RNEFLFKGIDYTPPSTVSKAREDMEEWLKRKEEEKTVANTAPRSSQHHRWKPPPTSWIKC 318
Query: 284 NVDASFKSLTELAGIGCIMYDDQANFISAMTDTTRG-QSAEECECKAIRWAIQWAIKIQI 342
N D +++ G+G I ++ + A + +G +S E E + I+WA
Sbjct: 319 NSDGAWQRDRHQNGVGWISRNEHGKLLWAGMKSVQGLRSPAEAEAEGIKWA--------- 369
Query: 343 THLHTKNSMS--SIIFRTLA 360
+H+ +S+ +IF T A
Sbjct: 370 --MHSMSSLGYKQVIFETDA 387
>XP_013669450.1 PREDICTED: uncharacterized protein LOC106373880 [Brassica napus]
Length = 1420
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 75/288 (26%), Positives = 121/288 (42%), Gaps = 42/288 (14%)
Query: 67 LQTNLLSQAGRSMVISTIAATENGEDTIRWHLTKSGNYTINFMYHNLRTTRYATQNDVIE 126
L + + R + A +G DT W TKSG+YT+ Y A + D I
Sbjct: 31 LLDKMFAPETREQIKKIHPAGRSGTDTYSWEYTKSGHYTVKSAYWVQVNVLDAKEKDSIV 90
Query: 127 LF--------FIWKINTTHRIKLFLWKCCTNSLSIRDK-IGKYIGNNYKCPNYNNN-ETI 176
L +W I T+ +I+ FLW+C +N+L + D + ++I + +C ET+
Sbjct: 91 LQPSLDGIYQQVWSIETSPKIRHFLWRCLSNALPVADNMVHRHIAKDKRCSRCGEEAETV 150
Query: 177 DHALLHRVHARSIWFYFNILTDDTNTVRDWMLQWKDLDDDLVNLYAKILWLILKARCEKC 236
+H L +A+ +++++DL+ +LW + K R E
Sbjct: 151 NHLLFLCPYAQ--------------------YPKEEIEEDLIPW---LLWRLWKNRNEFL 187
Query: 237 FSKQIQTPTHVINKIKATST--------KPLKTNTRADNKRYHFWRPPSAPYLKINVDAS 288
F + T + K + +T KP++ T W PP A LK N D S
Sbjct: 188 FRSREYTAPATVVKAREDATAWRSREEVKPVEAKTPTLEAPTKRWTPPQATRLKCNTDGS 247
Query: 289 FKSLTELAGIGCIMYDDQANFISAMTDTTRGQSAE-ECECKAIRWAIQ 335
+K T G+G ++ D N + A G +E E E +A+RWA Q
Sbjct: 248 WKQETGEGGVGWVLRDSMGNLMWAGAKRITGMGSELEVEAEALRWAAQ 295
Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 81/328 (24%), Positives = 129/328 (39%), Gaps = 68/328 (20%)
Query: 27 LKIRQSSTLDKYLGTNFFIGANKRQAFASIHNQIQ-NKLFKLQTNLLSQAGRSMVISTIA 85
L +R SS D+ + + +N R N + +K+F +T R +
Sbjct: 1041 LSMRMSSEGDRLRVSEELMVSNLRCNSGRDWNHVLLDKMFAPET-------REQIKKIHP 1093
Query: 86 ATENGEDTIRWHLTKSGNYTINFMYHNLRTTRYATQNDVIELF--------FIWKINTTH 137
A +G DT W +KSG+YT+ Y A + D I L +W I T+
Sbjct: 1094 AGRSGTDTYSWEYSKSGHYTVKSAYWVQVNMLDAKEKDSIVLQPSLDGIYQQVWSIETSP 1153
Query: 138 RIKLFLWKCCTNSLSIRDK-IGKYIGNNYKCPNYNNNETIDHALLHRVHARSIWFYFNIL 196
+I+ FLW+C +N+L + D + ++I + +C Y E
Sbjct: 1154 KIRHFLWRCLSNALPVADNMVHRHIAKDKRC-KYPKEE---------------------- 1190
Query: 197 TDDTNTVRDWMLQWKDLDDDLVNLYAKILWLILKARCEKCFSKQIQTPTHVINKIKATST 256
+++DL+ +LW + K R E F + T + K + +T
Sbjct: 1191 ----------------IEEDLIPW---LLWRLWKNRNEFLFRSREYTAPATVVKAREDAT 1231
Query: 257 --------KPLKTNTRADNKRYHFWRPPSAPYLKINVDASFKSLTELAGIGCIMYDDQAN 308
KP++ T W PP A LK N D S+K T G+G ++ D N
Sbjct: 1232 AWRSREEVKPVEAKTPTLEAPTKRWTPPQATRLKCNTDGSWKQETGEGGVGWVLRDSMGN 1291
Query: 309 FISAMTDTTRGQSAE-ECECKAIRWAIQ 335
+ A G +E E E +A+RWA Q
Sbjct: 1292 LMWAGAKRITGMGSELEVEAEALRWAAQ 1319
>XP_009119675.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 1046
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 45/303 (14%)
Query: 70 NLLSQAGRSMVISTIAATENGEDTIRWHLTKSGNYTINFMYHNLRTTRYAT---QNDVIE 126
+ ++ R+ ++ A +N +DT W TK+G+YT+ Y ++T+ + Q++V++
Sbjct: 651 GMFTEEIRNKILEIRPAGKNSKDTYVWDYTKTGHYTVKSGYW-VQTSVVSVDKEQSEVLQ 709
Query: 127 L----FF--IWKINTTHRIKLFLWKCCTNSLSI-RDKIGKYIGNNYKCPNYNN-NETIDH 178
F+ +WK+ ++ +IK FLW+C N+L + + + ++IG + +C + E+I+H
Sbjct: 710 PSLDSFYQQVWKLQSSPKIKHFLWRCLNNALPVAANMVYRHIGKDKRCSRCDGVAESINH 769
Query: 179 ALLHRVHARSIWFYFNILTDDTNTVRD-------WMLQWK------DLDDDLVNLYAKIL 225
L +AR +W ++ D W+L K ++D++ V +L
Sbjct: 770 LLFQCPYARLVWAVAHVHIPPEGRWSDSLFANLYWVLNQKTKYPTEEVDEEFVPW---LL 826
Query: 226 WLILKARCEKCFSKQIQTPTHVI------------NKIKATSTKPLKTNTRADNKRYHFW 273
W + K R E F + P H+ ++I+ + + +KR W
Sbjct: 827 WRLWKNRNEFVFRGR-DFPAHITVRKAWEDVMDWKSRIEVQEEVAKEPAVVSPDKR---W 882
Query: 274 RPPSAPYLKINVDASFKSLTELAGIGCIMYDDQANFI-SAMTDTTRGQSAEECECKAIRW 332
PP+ LK N D ++ T + G+G ++ D Q + + +SA E E +AIRW
Sbjct: 883 IPPAPMTLKCNTDGAWSKETGVGGVGWLLRDHQGTLLWAGAKKMAVMRSALETEAEAIRW 942
Query: 333 AIQ 335
AIQ
Sbjct: 943 AIQ 945