BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0190.1
(231 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 344 e-110
BAA22288.1 polyprotein [Oryza australiensis] 348 e-108
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 343 e-106
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 344 bits (883), Expect = e-110, Method: Compositional matrix adjust.
Identities = 160/228 (70%), Positives = 190/228 (83%)
Query: 1 MKKVPYASAIGSIMYTMVCTRPDVSYALSLCSCYQSNSGERHWTAAKNILKYLRRTKDHF 60
M +PYASAIGSIMY M+CTRPDVSYALS+ S YQ++ E HWTA KNILKYLRRTKD F
Sbjct: 669 MSDIPYASAIGSIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVF 728
Query: 61 LFYGGKDELIVEGHVDASFQTDINDFRSQSGYVFCLNGRAVSWKSSKQTTVADSITEAEY 120
L YGG +EL+V G+ DASFQTD +D+RSQSG+VF LNG AVSWKSSKQ TVADS TEAEY
Sbjct: 729 LVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTEAEY 788
Query: 121 LAASEATKEGVWIKKFISELGVVPSIEKGVTLYCDNNGAIAQAKEPRAHQKSKHIQRKNH 180
+AASEA KEGVWI+ FI+ELG+VPS + LYCDNNGAIAQAKEPR+HQKSKHI R+ H
Sbjct: 789 IAASEAAKEGVWIRNFITELGMVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYH 848
Query: 181 VIREITERKDVVICKIDTDDNVADPLTKLLPQPKYESHRKGIGLKRME 228
+IRE+ +R DV ICK+ TD N+ADPLTK L QPK+E+H + IG++ ++
Sbjct: 849 LIRELVDRGDVKICKVHTDLNIADPLTKPLTQPKHEAHTRAIGIRYLK 896
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 348 bits (892), Expect = e-108, Method: Compositional matrix adjust.
Identities = 163/229 (71%), Positives = 193/229 (84%)
Query: 1 MKKVPYASAIGSIMYTMVCTRPDVSYALSLCSCYQSNSGERHWTAAKNILKYLRRTKDHF 60
M VPYASAIGSIMY M+CTRPDVSYALS S YQS+ GE HWTA KNILKYLRRTKD F
Sbjct: 1089 MGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMF 1148
Query: 61 LFYGGKDELIVEGHVDASFQTDINDFRSQSGYVFCLNGRAVSWKSSKQTTVADSITEAEY 120
L YGG+++L+V G+ DASFQTD +D+RSQSG+VFCLNG AVSWKSSKQ TVADS TEAEY
Sbjct: 1149 LVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEY 1208
Query: 121 LAASEATKEGVWIKKFISELGVVPSIEKGVTLYCDNNGAIAQAKEPRAHQKSKHIQRKNH 180
+AASEA KE VWIKKF+SELGV+ S ++LYCDN+GAIAQAKEPR+HQKSKHI R+ H
Sbjct: 1209 IAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYH 1268
Query: 181 VIREITERKDVVICKIDTDDNVADPLTKLLPQPKYESHRKGIGLKRMEE 229
+IREI +R DV ICK+ TD N+ADPLTK LPQPK+E+H + +G++ + +
Sbjct: 1269 LIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRYLHD 1317
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 343 bits (879), Expect = e-106, Method: Compositional matrix adjust.
Identities = 162/229 (70%), Positives = 190/229 (82%)
Query: 1 MKKVPYASAIGSIMYTMVCTRPDVSYALSLCSCYQSNSGERHWTAAKNILKYLRRTKDHF 60
M +PYASAIGSIMY M+CTR DVSYALS+ S YQ++ GE HWTA KNILKYLRRTKD F
Sbjct: 1085 MNGIPYASAIGSIMYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRTKDAF 1144
Query: 61 LFYGGKDELIVEGHVDASFQTDINDFRSQSGYVFCLNGRAVSWKSSKQTTVADSITEAEY 120
L YGG +EL+V G+ DASFQTD +D+RSQSG+VF LNG AVSWKSSKQ TVADS T+AEY
Sbjct: 1145 LIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTKAEY 1204
Query: 121 LAASEATKEGVWIKKFISELGVVPSIEKGVTLYCDNNGAIAQAKEPRAHQKSKHIQRKNH 180
+AASEA KEGVWI+ FI+ELGVVPS + LYCDNNGAIAQAKEPR+HQKSKHI R+ H
Sbjct: 1205 IAASEAAKEGVWIRNFIAELGVVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYH 1264
Query: 181 VIREITERKDVVICKIDTDDNVADPLTKLLPQPKYESHRKGIGLKRMEE 229
+IRE+ +R DV ICKI TD NVADPLTK L QPK+E+H + IG++ + +
Sbjct: 1265 LIRELVDRGDVKICKIHTDLNVADPLTKPLTQPKHEAHTRAIGIRYLND 1313