BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0200.1
(343 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 452 e-145
BAA22288.1 polyprotein [Oryza australiensis] 449 e-144
AAP44605.1 putative polyprotein [Oryza sativa Japonica Group] 443 e-143
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 452 bits (1163), Expect = e-145, Method: Compositional matrix adjust.
Identities = 221/330 (66%), Positives = 265/330 (80%), Gaps = 9/330 (2%)
Query: 5 GDPPAQSELDSQENPQGVESISPV--VQSPRRSARLIELSQR--QDILLIEDNEPNTYEE 60
G P+ S L ++N + PV +PRRS R ++ R DILL+ ++EPNTY+E
Sbjct: 742 GKSPSLSFLKDEQN-----IVEPVDEASAPRRSKRPCQMPIRYAHDILLLNNDEPNTYKE 796
Query: 61 AVSSPDSEKWLGAMKSEMDSMSENQVWNLVDLPDGVEPIGCKWIFKMKTDKDGNVSVFKS 120
A+ PDSEKWLGAMKSE+DSM +NQVWNLVD DGV+ I CKWI+K K D DGNV + K+
Sbjct: 797 AMMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMDGNVHIHKA 856
Query: 121 RLVAKGYRQVQGIDYEETFSPVAMLKSIRVILEIAAHYDYEIWQMDVKTAFLNGKPEEDV 180
RLVAKG+RQVQG+DY+ETFS VAMLKSIR+IL IAA++DYEIWQMDVKTAFLNGK EDV
Sbjct: 857 RLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDV 916
Query: 181 YMTQPEGFEDSKNAGKVCKLQRSIYGLKQASRSWNLHFDDKIKEFDFLKNEEESCVYKKV 240
YMTQPEGF D NA KVCKLQ+SIYGLKQASRSWN+ FD++IK F F+KN+EE CVY KV
Sbjct: 917 YMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKV 976
Query: 241 SGSNLVFLVLYVDDILIVGNNIPMLNSVKKWLRKCFSMKDLGDAEYILVIKIYRDRSRKM 300
SGS LV L+LYVDDIL++GN+IPML SVK L+ FSMKDLG+A YIL IKIYRDRSR++
Sbjct: 977 SGSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRL 1036
Query: 301 IGLSHETYIDKILWRFKMEDSKRGFLPMTQ 330
IGLS TYIDK+L RF M+++K+GFLPM+
Sbjct: 1037 IGLSQSTYIDKVLIRFNMQNTKKGFLPMSH 1066
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 449 bits (1154), Expect = e-144, Method: Compositional matrix adjust.
Identities = 214/345 (62%), Positives = 269/345 (77%), Gaps = 19/345 (5%)
Query: 16 QENPQGVESIS-----------PVVQSP--------RRSARLIELSQRQDILLIEDNEPN 56
QE P+ V + + PVV +P RR+ ++++DILL++++EP
Sbjct: 737 QETPETVSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDRYTGAEQRDILLLDNDEPK 796
Query: 57 TYEEAVSSPDSEKWLGAMKSEMDSMSENQVWNLVDLPDGVEPIGCKWIFKMKTDKDGNVS 116
TYEEA+ DS KWLGAMKSE++SM +NQVWNLVD PDGV+ I CKW+FK K D DGNV
Sbjct: 797 TYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVH 856
Query: 117 VFKSRLVAKGYRQVQGIDYEETFSPVAMLKSIRVILEIAAHYDYEIWQMDVKTAFLNGKP 176
++K+RLVAKG++Q+QG+DY+ETFSPVAMLKSIR+IL IAA++DYEIWQMDVKTAFLNG
Sbjct: 857 IYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNL 916
Query: 177 EEDVYMTQPEGFEDSKNAGKVCKLQRSIYGLKQASRSWNLHFDDKIKEFDFLKNEEESCV 236
EDVYM QP+GF D ++ GK+CKLQ+SIYGLKQASRSWN+ FD+ IK F F+KNEEE+CV
Sbjct: 917 SEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACV 976
Query: 237 YKKVSGSNLVFLVLYVDDILIVGNNIPMLNSVKKWLRKCFSMKDLGDAEYILVIKIYRDR 296
YKKVSGS +VFL+LYVDDIL++GN+IPML SVK L+ FSMKDLG+A YIL I+IYRDR
Sbjct: 977 YKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDR 1036
Query: 297 SRKMIGLSHETYIDKILWRFKMEDSKRGFLPMTQWHNVKHDSVSQ 341
S+++IGLS TYIDK+L RF M DSK+GFLPM+ N+ + Q
Sbjct: 1037 SKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQ 1081
>AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 443 bits (1139), Expect = e-143, Method: Compositional matrix adjust.
Identities = 207/316 (65%), Positives = 260/316 (82%), Gaps = 2/316 (0%)
Query: 28 VVQSPRRSARLIELSQRQDILLIEDNEPNTYEEAVSSPDSEKWLGAMKSEMDSMSENQVW 87
+ ++P R A L S ++DILL++++EP TYEEA+ PD+EKWLGAMKSE++SM NQVW
Sbjct: 632 IRRTPARYALLT--SGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVW 689
Query: 88 NLVDLPDGVEPIGCKWIFKMKTDKDGNVSVFKSRLVAKGYRQVQGIDYEETFSPVAMLKS 147
NLVD PDGV+ I CKWIFK TD DG V ++ +RLVAKG+RQ+QG+DY+ETFSPVAMLKS
Sbjct: 690 NLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKS 749
Query: 148 IRVILEIAAHYDYEIWQMDVKTAFLNGKPEEDVYMTQPEGFEDSKNAGKVCKLQRSIYGL 207
IR++L IAA++DYEIWQMDVKTAFLNG +EDVYMTQP+GF D ++A K+CKLQ+SIY L
Sbjct: 750 IRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRL 809
Query: 208 KQASRSWNLHFDDKIKEFDFLKNEEESCVYKKVSGSNLVFLVLYVDDILIVGNNIPMLNS 267
KQASRSWN+ FD+ +K F+KNEEE CVYKK+SGS LVFL+LYVDDIL++GN+IPML S
Sbjct: 810 KQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLES 869
Query: 268 VKKWLRKCFSMKDLGDAEYILVIKIYRDRSRKMIGLSHETYIDKILWRFKMEDSKRGFLP 327
VK L+ FSMKDLG+A YIL I+IYRDRS+++IGLS TYIDK+L RF M+DSK+GFLP
Sbjct: 870 VKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLP 929
Query: 328 MTQWHNVKHDSVSQRS 343
M+ N+ + Q +
Sbjct: 930 MSHGINLGKNQCPQTT 945