BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0480.1
(475 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 558 0.0
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 546 e-180
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 525 e-175
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 558 bits (1437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 265/423 (62%), Positives = 323/423 (76%), Gaps = 3/423 (0%)
Query: 32 KESVIELPEREVEVGAYVIEVNLVDMADSP--SWVYDTGCGAHIISELDELKEVRYLTKS 89
K+ + +L +++ A I V +++A SP SWV+DTG AH L ++ R L +
Sbjct: 269 KKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFDTGSVAHSCKSLQGMRRSRGLRRG 328
Query: 90 EMVLRVANKARVAAVAVGTFELSLDTGLILVLRNCYYVPTISRNIISASVLDKEGYHAII 149
E+ LRV N A VA VAVGT L L +GL+L L NCY VPT+ +N+ISAS L EGY
Sbjct: 329 EVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQAEGYDFRS 388
Query: 150 KDKSCSLYKGEMFYTSAKLRNGLYVVNIE-DEILNIDTKRLRTHDSNQSYLWHCRLGHIN 208
+ CS+Y +MFY A L NGLYV+N+E I NI+T+R ++D N +++WHCRLGHIN
Sbjct: 389 MNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHIN 448
Query: 209 MKRMQKLHSDGLLGSCDLESYDTCEPCLVGKMTRSSFKGKGDRVSEPLGLIHTDVCGPMS 268
KRM+KLH DGLL S D ES++TCE CL+GKMT++ F G +R S+ L L+HTDVCGPMS
Sbjct: 449 KKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMS 508
Query: 269 TLARGNYGYFITFTDDFTRYGYVYLMRHKSESFEVFKQFQNEVENQLGKKIKAIRSDRGG 328
+ ARG Y YFITFTDDF+RYGY+YLMRHKSESFE FK+FQNEV+N LGK IK +RSDRGG
Sbjct: 509 STARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGG 568
Query: 329 EYLSQEFEDHLRSCGIVSQLTPPGTPQMNGVSERRNRTLMDMVRSMMNLADLPDTFWGYA 388
EY+SQEF +HL+ CGIV QLTPPGTPQ NGVSERRNRTL+DMVRSMM+ +DLP +FWGYA
Sbjct: 569 EYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYA 628
Query: 389 LETAAFTLNRAPSKAVEKTPYEIWTGKVPKLSFLKVWGCDVYVKRLQGDKLAPRSDKCLF 448
LETAA TLNR PSK+VEKTPYEIWTG+ P LSFLK+WGC+ YVKRLQ DKL P+SDKC
Sbjct: 629 LETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFV 688
Query: 449 VGY 451
VGY
Sbjct: 689 VGY 691
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 546 bits (1406), Expect = e-180, Method: Compositional matrix adjust.
Identities = 261/434 (60%), Positives = 323/434 (74%), Gaps = 5/434 (1%)
Query: 19 WEEDQRRVLDASKKESVIELPEREVEVGAYVIEVNLVDMADSPSWVYDTGCGAHIISELD 78
W+ + ++ L+ K++ + + G VIE+NL + + SWV+DTG AHI L
Sbjct: 238 WKRNCKKYLEQLKQK---QQDGKSSTSGINVIEINLA-TSSTDSWVFDTGSVAHICKSLQ 293
Query: 79 ELKEVRYLTKSEMVLRVANKARVAAVAVGTFELSLDTGLILVLRNCYYVPTISRNIISAS 138
LK R L + E+ +RV N ARVAAVAVGT LSL + L+L L N Y +P + +N+ISAS
Sbjct: 294 GLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISAS 353
Query: 139 VLDKEGYHAIIKDKSCSLYKGEMFYTSAKLRNGLYVVNIED-EILNIDTKRLRTHDSNQS 197
L EGY D CS+Y ++FY A + +GLY+VN+ + NI+ KR R +D N +
Sbjct: 354 CLQAEGYGFRSVDNDCSVYYNDIFYFHAPMMSGLYIVNLNGYSVYNINAKRQRPNDLNPT 413
Query: 198 YLWHCRLGHINMKRMQKLHSDGLLGSCDLESYDTCEPCLVGKMTRSSFKGKGDRVSEPLG 257
++WHCRLGHIN KRM+K+H DGLL S D ES++TCE CL+GKMT++ F G+ +R SE L
Sbjct: 414 FIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLA 473
Query: 258 LIHTDVCGPMSTLARGNYGYFITFTDDFTRYGYVYLMRHKSESFEVFKQFQNEVENQLGK 317
L+HTDVCGPMS+ ARG +GYF TFTDDF+RYGYVYLMRHKSESFE FK+F NEV+N LGK
Sbjct: 474 LVHTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGK 533
Query: 318 KIKAIRSDRGGEYLSQEFEDHLRSCGIVSQLTPPGTPQMNGVSERRNRTLMDMVRSMMNL 377
IK +RSDRGGEYLS EF +HL+ CGIV QLTPPGTPQ NGVSE RNRTL+DMVRSMM+
Sbjct: 534 TIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQ 593
Query: 378 ADLPDTFWGYALETAAFTLNRAPSKAVEKTPYEIWTGKVPKLSFLKVWGCDVYVKRLQGD 437
+L +FWGYALET AFTLN PSK+V+KTPYEIWTGK P LSFLK+WGC+VYVKRLQ D
Sbjct: 594 TNLLLSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 653
Query: 438 KLAPRSDKCLFVGY 451
KL P+SDKC FVGY
Sbjct: 654 KLTPKSDKCFFVGY 667
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 525 bits (1353), Expect = e-175, Method: Compositional matrix adjust.
Identities = 241/335 (71%), Positives = 278/335 (82%)
Query: 117 LILVLRNCYYVPTISRNIISASVLDKEGYHAIIKDKSCSLYKGEMFYTSAKLRNGLYVVN 176
++L L+NCYYVP I++NIIS S LD EG+H IK+K CS + +MFY SA L NGL+V+N
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60
Query: 177 IEDEILNIDTKRLRTHDSNQSYLWHCRLGHINMKRMQKLHSDGLLGSCDLESYDTCEPCL 236
I NI TK+ +++D N ++LWHCRLGHIN K +QKLHSDGLL S D ESY+TCE CL
Sbjct: 61 QSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCL 120
Query: 237 VGKMTRSSFKGKGDRVSEPLGLIHTDVCGPMSTLARGNYGYFITFTDDFTRYGYVYLMRH 296
+GKMT++ F G +R S+ LGLIHTDVCGPMST ARGNY YFITFTDDF+RYGYVYLM+H
Sbjct: 121 LGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKH 180
Query: 297 KSESFEVFKQFQNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRSCGIVSQLTPPGTPQM 356
KS+SFE FK+FQNEV+NQ GK IKA+RSDRGGEYLSQ F DHLR CGIVSQLTPPGTPQ
Sbjct: 181 KSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQW 240
Query: 357 NGVSERRNRTLMDMVRSMMNLADLPDTFWGYALETAAFTLNRAPSKAVEKTPYEIWTGKV 416
NGVSERRNRTL+DMVRSMM+ DLP FWGYALET+AF LNR PSK+VEKTPYEIWTGKV
Sbjct: 241 NGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKV 300
Query: 417 PKLSFLKVWGCDVYVKRLQGDKLAPRSDKCLFVGY 451
P LSFLK+WGC+ Y KRL DKL P+SDKC FVGY
Sbjct: 301 PNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGY 335