BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0630.1
(169 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ERN20584.1 hypothetical protein AMTR_s00070p00072810 [Amborella ... 56 1e-06
KYP66597.1 Retrovirus-related Pol polyprotein from transposon TN... 57 2e-06
KYP66618.1 Retrovirus-related Pol polyprotein from transposon TN... 57 2e-06
>ERN20584.1 hypothetical protein AMTR_s00070p00072810 [Amborella trichopoda]
Length = 217
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 14 LSTALVAKTEPLSTYQSN---QIQSSQTYTPKGGRGGRNGDRRRGRGRSNYYGQQQWSSS 70
L + L+ + + L Y S+ I+S+ RG R DR +G GR + Q
Sbjct: 54 LYSILLNRKKRLEQYHSSTNENIRSAFFTIRDCSRGNRVRDRDQGGGRG--HDTQTLQVI 111
Query: 71 NRNQQKSVLDTPSFPTQQRNYQ-SQDIPQSFAAYQPSSIPYDPNLYADSDASNHMISDSS 129
+VL Q+ N+ + D P +F A S+ PYD Y D A+NHMI ++S
Sbjct: 112 YNKAGHNVLHC----LQRYNFTYALDFPAAFFAMNLSTDPYDSTWYPDIAATNHMIENAS 167
Query: 130 MLVTKSPYYGPGQIAIGNRTILPVHNVGKIILGPP--NLLL 168
++ SPY G I + N L +++ G L P N LL
Sbjct: 168 SIMHPSPYTGQEPIVVANGKTLLINSTGTTYLHTPLSNFLL 208
>KYP66597.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 562
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 43 GGRGGRNGDRRRGR-GRSNYYGQQQWSSSNRNQQKSVLDTPSFPTQQRNYQSQDIP---- 97
GGRG R + G+ G S Y+ WS + N P T Q N I
Sbjct: 229 GGRGQRIQCQLCGKLGHSAYHC---WSRFDEN-------LPDPKTTQHNTSDAVIQEPLH 278
Query: 98 QSFAAYQPSSIPYDPNLYADSDASNHMISDSSMLVTKSPYYGPGQIAIGNRTILPVHNVG 157
Q+ A + D Y D+ ASNH S+ S L+ K+P+ G ++ +GN LP+HN+G
Sbjct: 279 QAMTATSATQSSLDETWYPDTGASNHFTSNLSNLMIKTPFVGTEKVVVGNGNCLPIHNIG 338
Query: 158 KIILGPP 164
L P
Sbjct: 339 TSKLKNP 345
>KYP66618.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 660
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 43 GGRGGRNGDRRRGR-GRSNYYGQQQWSSSNRNQQKSVLDTPSFPTQQRNYQSQDIP---- 97
GGRG R + G+ G S Y+ WS + N P T Q N I
Sbjct: 59 GGRGQRIQCQLCGKLGHSAYHC---WSRFDEN-------LPDPKTTQHNTSDAVIQEPLH 108
Query: 98 QSFAAYQPSSIPYDPNLYADSDASNHMISDSSMLVTKSPYYGPGQIAIGNRTILPVHNVG 157
Q+ A + D Y D+ ASNH S+ S L+ K+P+ G ++ +GN LP+HN+G
Sbjct: 109 QAMTATSATQSSLDETWYPDTGASNHFTSNLSNLMIKTPFVGTEKVVVGNGNCLPIHNIG 168
Query: 158 KIILGPP 164
L P
Sbjct: 169 TSKLKNP 175