BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0920.1
(130 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 196 6e-56
BAA22288.1 polyprotein [Oryza australiensis] 189 2e-53
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 188 4e-53
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 196 bits (498), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 95/153 (62%), Positives = 107/153 (69%), Gaps = 24/153 (15%)
Query: 1 MDSMSDYQVWDLIDLPDGAKPIECKWVFKMKTDEDGNVSVFKARLVANGYKQIH------ 54
M+SMS +VW L+DLPDG KPIECKW+FK K D DGN+ ++KA LVA GYKQ+H
Sbjct: 465 MESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDE 524
Query: 55 ------------------VHYDYEIWQMDVKTAFLNGNLEDDVYMTQPEDFVDSNNAGKV 96
HYDYEIWQMDVKTAFLNGNLE+ VYMTQPE F A KV
Sbjct: 525 TYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKV 584
Query: 97 CKLKRSISGLKQASRSWNLRFDEAIKEFGFLKN 129
CKL RSI GLKQASRSWNLRF+EAIKEF F++N
Sbjct: 585 CKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRN 617
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 189 bits (481), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 108/153 (70%), Gaps = 24/153 (15%)
Query: 1 MDSMSDYQVWDLIDLPDGAKPIECKWVFKMKTDEDGNVSVFKARLVANGYKQIH------ 54
++SM D QVW+L+D PDG K IECKW+FK K D DGNV ++KARLVA G+KQI
Sbjct: 818 IESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDE 877
Query: 55 ------------------VHYDYEIWQMDVKTAFLNGNLEDDVYMTQPEDFVDSNNAGKV 96
++DYEIWQMDVKTAFLNGNL +DVYM QP+ FVD + GK+
Sbjct: 878 TFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKI 937
Query: 97 CKLKRSISGLKQASRSWNLRFDEAIKEFGFLKN 129
CKL++SI GLKQASRSWN+RFDE IK FGF+KN
Sbjct: 938 CKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKN 970
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 188 bits (478), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 107/153 (69%), Gaps = 24/153 (15%)
Query: 1 MDSMSDYQVWDLIDLPDGAKPIECKWVFKMKTDEDGNVSVFKARLVANGYKQIH------ 54
+DSM D QVW+L+D DG K IECKW++K K D DGNV + KARLVA G++Q+
Sbjct: 814 IDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMDGNVHIHKARLVAKGFRQVQGVDYDE 873
Query: 55 ------------------VHYDYEIWQMDVKTAFLNGNLEDDVYMTQPEDFVDSNNAGKV 96
++DYEIWQMDVKTAFLNG L +DVYMTQPE FVD NNA KV
Sbjct: 874 TFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKV 933
Query: 97 CKLKRSISGLKQASRSWNLRFDEAIKEFGFLKN 129
CKL++SI GLKQASRSWN+RFDE IK FGF+KN
Sbjct: 934 CKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKN 966