BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0930.1
(170 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 239 4e-70
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 234 3e-69
BAA22288.1 polyprotein [Oryza australiensis] 236 5e-69
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 239 bits (609), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 105/165 (63%), Positives = 135/165 (81%)
Query: 5 ENEVFNIETERLRSDDSNPSYLWHCRVGHINMTRMKKLHNHRLLGSYDLESYDTCESCLM 64
+ +FNI +RLR ++ N +++WHCR+GHI+ RMKKLH+ +L S+DLES++TCESC++
Sbjct: 506 DAPIFNINAKRLRPNNMNSTFIWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCIL 565
Query: 65 GKMTRFSFKGKGDRAIKPLKLIHTDVCGPMSTLARGKFGYLITFTDDFTRYGYIYLMKHK 124
GKMT+ F G+ +RA L LIHTDVCGPMST ARG F Y ITFTDD++RYGYIYLM+HK
Sbjct: 566 GKMTKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHK 625
Query: 125 SESFDMFKQFQNEVENQLGKKIKTIRSDRGGEYLSQEFDARLRSC 169
SESF+ FK+FQNEV+NQLGK IK++RSDRGGE+LSQEF L+ C
Sbjct: 626 SESFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEFGNHLKQC 670
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 234 bits (598), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 132/169 (78%)
Query: 1 MTNIENEVFNIETERLRSDDSNPSYLWHCRVGHINMTRMKKLHNHRLLGSYDLESYDTCE 60
+ N ++NI T++ +S+D NP++LWHCR+GHIN ++KLH+ LL S+D ESY+TCE
Sbjct: 58 VLNQSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCE 117
Query: 61 SCLMGKMTRFSFKGKGDRAIKPLKLIHTDVCGPMSTLARGKFGYLITFTDDFTRYGYIYL 120
SCL+GKMT+ F G +RA L LIHTDVCGPMST ARG + Y ITFTDDF+RYGY+YL
Sbjct: 118 SCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYL 177
Query: 121 MKHKSESFDMFKQFQNEVENQLGKKIKTIRSDRGGEYLSQEFDARLRSC 169
MKHKS+SF+ FK+FQNEV+NQ GK IK +RSDRGGEYLSQ F LR C
Sbjct: 178 MKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLREC 226
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 236 bits (601), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 134/168 (79%), Gaps = 1/168 (0%)
Query: 3 NIE-NEVFNIETERLRSDDSNPSYLWHCRVGHINMTRMKKLHNHRLLGSYDLESYDTCES 61
N+E + ++NI TER S+D NP+++WHCR+GHIN RM+KLH LL S+D ES++TCES
Sbjct: 415 NLEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCES 474
Query: 62 CLMGKMTRFSFKGKGDRAIKPLKLIHTDVCGPMSTLARGKFGYLITFTDDFTRYGYIYLM 121
CL+GKMT+ F G +RA L L+HTDVCGPMS+ ARG + Y ITFTDDF+RYGYIYLM
Sbjct: 475 CLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLM 534
Query: 122 KHKSESFDMFKQFQNEVENQLGKKIKTIRSDRGGEYLSQEFDARLRSC 169
+HKSESF+ FK+FQNEV+N LGK IK +RSDRGGEY+SQEF L+ C
Sbjct: 535 RHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDC 582