BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0950.1
(123 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 191 2e-54
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 185 4e-52
BAA22288.1 polyprotein [Oryza australiensis] 183 2e-51
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 191 bits (486), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 104/123 (84%)
Query: 1 MDSMSENQVWDLVDLPDGVKPIECKWVFKMKIDKDGNLSIFKARLVAKGYLQIHRIDYYK 60
M+SMS+N+VW LVDLPDGVKPIECKW+FK KID DGN+ I+KA LVAKGY Q+H IDY +
Sbjct: 465 MESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDE 524
Query: 61 TFFSVAMLKSIRIILAIAAHYDYEICQMDVKTSFLNGNLEEDVYMTKPEGFIDPNNAGKV 120
T+ VAMLKSIRI+LA AAHYDYEI QMDVKT+FLNGNLEE VYMT+PEGF P A KV
Sbjct: 525 TYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKV 584
Query: 121 YKL 123
KL
Sbjct: 585 CKL 587
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 185 bits (469), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 89/123 (72%), Positives = 104/123 (84%)
Query: 1 MDSMSENQVWDLVDLPDGVKPIECKWVFKMKIDKDGNLSIFKARLVAKGYLQIHRIDYYK 60
+DSM +NQVW+LVD DGVK IECKW++K KID DGN+ I KARLVAKG+ Q+ +DY +
Sbjct: 814 IDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMDGNVHIHKARLVAKGFRQVQGVDYDE 873
Query: 61 TFFSVAMLKSIRIILAIAAHYDYEICQMDVKTSFLNGNLEEDVYMTKPEGFIDPNNAGKV 120
TF VAMLKSIRIILAIAA++DYEI QMDVKT+FLNG L EDVYMT+PEGF+DPNNA KV
Sbjct: 874 TFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKV 933
Query: 121 YKL 123
KL
Sbjct: 934 CKL 936
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 183 bits (464), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 104/123 (84%)
Query: 1 MDSMSENQVWDLVDLPDGVKPIECKWVFKMKIDKDGNLSIFKARLVAKGYLQIHRIDYYK 60
++SM +NQVW+LVD PDGVK IECKW+FK K D DGN+ I+KARLVAKG+ QI +DY +
Sbjct: 818 IESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDE 877
Query: 61 TFFSVAMLKSIRIILAIAAHYDYEICQMDVKTSFLNGNLEEDVYMTKPEGFIDPNNAGKV 120
TF VAMLKSIRIILAIAA++DYEI QMDVKT+FLNGNL EDVYM +P+GF+DP + GK+
Sbjct: 878 TFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKI 937
Query: 121 YKL 123
KL
Sbjct: 938 CKL 940