BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0320.1
(559 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 597 0.0
BAA22288.1 polyprotein [Oryza australiensis] 600 0.0
AAM74249.1 Putative retroelement [Oryza sativa Japonica Group] 562 0.0
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 597 bits (1540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 283/468 (60%), Positives = 350/468 (74%), Gaps = 23/468 (4%)
Query: 3 RMKKLHEHGLLGSYNLESYDTCESCLMGKMTRSSFKGKGDRAKEPLELIHTDVCGPMSTP 62
++KLH GLL S++ ESY+TCESCL+GKMT++ F G +RA + L LIHTDVCGPMST
Sbjct: 95 HIQKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTS 154
Query: 63 ARGNYGYFITFTDDFTRYGYIYLMRHKSESFDMFKQFQNEVENQLGKKIKAIRSDRGGEY 122
ARGNY YFITFTDDF+RYGY+YLM+HKS+SF+ FK+FQNEV+NQ GK IKA+RSDRGGEY
Sbjct: 155 ARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEY 214
Query: 123 LSQEFDDHLRSCGIVSQLTPPGTPQMNGVSERRNSTLLDMVRSMMSLANLPNTFWGYALE 182
LSQ F DHLR CGIVSQLTPPGTPQ NGVSERRN TLLDMVRSMMS +LP+ FWGYALE
Sbjct: 215 LSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALE 274
Query: 183 TAAFTLNRAPSKAVEKTPYELWFGKIPKLSFLKVWGCEVYVKRLQGDKLAPKSDKCLFVG 242
T+AF LNR PSK+VEKTPYE+W GK+P LSFLK+WGCE Y KRL DKL PKSDKC FVG
Sbjct: 275 TSAFMLNRCPSKSVEKTPYEIWTGKVPNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVG 334
Query: 243 YPKETRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQINTDIEISR 302
YPKET+GYYFYH ++NKVFV R+G FLE+EFLSK TSG V ++E+R Q
Sbjct: 335 YPKETKGYYFYHPTDNKVFVVRNGAFLEREFLSKGTSGSKVLLEEVREPQ---------- 384
Query: 303 GLAAPIYTQSMEEENEVER-VPPAQVESNSQETSQLVENTPKVAQAPRRSQRLQELSQKT 361
+ T E + ++ R V P VE V + + P R + +
Sbjct: 385 ---GDVPTSQEEHQLDLRRVVEPILVEPE-------VRRSERSRHEPDRFRDW--VMDDH 432
Query: 362 DILLLEDNEPSTYNQAMTSPDSEKWLKAMRSEMDSMSENQVWNLIDLPDGAKPIGCKWVF 421
+ ++E +EP++Y +A+ PDS+KWL+A +SEM+SMS+N+VW L+DLPDG KPI CKW+F
Sbjct: 433 ALFMIESDEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIF 492
Query: 422 KVKTDKDGNVSVFKARLVSKGYKQIHGIDYDETFSPQDIIDQLKQSFA 469
K K D DGN+ ++KA LV+KGYKQ+HGIDYDET+SP ++ ++ A
Sbjct: 493 KKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLA 540
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 600 bits (1546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 289/474 (60%), Positives = 357/474 (75%), Gaps = 36/474 (7%)
Query: 3 RMKKLHEHGLLGSYNLESYDTCESCLMGKMTRSSFKGKGDRAKEPLELIHTDVCGPMSTP 62
RM+KLH+ GLL S++ ES++TCESCL+GKMT++ F G +RA + L L+HTDVCGPMS+
Sbjct: 451 RMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSST 510
Query: 63 ARGNYGYFITFTDDFTRYGYIYLMRHKSESFDMFKQFQNEVENQLGKKIKAIRSDRGGEY 122
ARG Y YFITFTDDF+RYGYIYLMRHKSESF+ FK+FQNEV+N LGK IK +RSDRGGEY
Sbjct: 511 ARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEY 570
Query: 123 LSQEFDDHLRSCGIVSQLTPPGTPQMNGVSERRNSTLLDMVRSMMSLANLPNTFWGYALE 182
+SQEF +HL+ CGIV QLTPPGTPQ NGVSERRN TLLDMVRSMMS ++LP +FWGYALE
Sbjct: 571 VSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALE 630
Query: 183 TAAFTLNRAPSKAVEKTPYELWFGKIPKLSFLKVWGCEVYVKRLQGDKLAPKSDKCLFVG 242
TAA TLNR PSK+VEKTPYE+W G+ P LSFLK+WGCE YVKRLQ DKL PKSDKC VG
Sbjct: 631 TAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFVVG 690
Query: 243 YPKETRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQINTDIEISR 302
YPKET+GYYFY+ + KVFVAR GVFLEKEFLS++ SG V ++E++ E
Sbjct: 691 YPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQ---------ETPE 741
Query: 303 GLAAPIYTQSMEEENEVERVPPAQVESNSQETSQLVENTPKVAQAPRRSQRLQEL----- 357
++A T+ +E+ V PP V +TP APRRS+R +
Sbjct: 742 TVSAT--TEPQQEDQSV--APP-------------VVDTP----APRRSERSRRAPDRYT 780
Query: 358 -SQKTDILLLEDNEPSTYNQAMTSPDSEKWLKAMRSEMDSMSENQVWNLIDLPDGAKPIG 416
+++ DILLL+++EP TY +AM DS KWL AM+SE++SM +NQVWNL+D PDG K I
Sbjct: 781 GAEQRDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIE 840
Query: 417 CKWVFKVKTDKDGNVSVFKARLVSKGYKQIHGIDYDETFSPQDIIDQLKQSFAM 470
CKW+FK K D DGNV ++KARLV+KG+KQI G+DYDETFSP ++ ++ A+
Sbjct: 841 CKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAI 894
>AAM74249.1 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 562 bits (1448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 277/479 (57%), Positives = 344/479 (71%), Gaps = 43/479 (8%)
Query: 4 MKKLHEHGLLGSYNLESYDTCESCLMGKMTRSSFKGKGDRAKEPLELIHTDVCGPMSTPA 63
M+KLH GLL S++ ES++TCESCL+GK+T++ F G+ +RA E L L+HTDVCGPMS+ A
Sbjct: 1 MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60
Query: 64 RGNYGYFITFTDDFTRYGYIYLMRHKSESFDMFKQFQNEVENQLGKKIKAIRSDRGGEYL 123
RG +GYFI FTDDF+RYGY+YLMRHKSESF+ FK+F NEV+N L K IK +RSDRGGEY
Sbjct: 61 RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120
Query: 124 SQEFDDHLRSCGIVSQLTPPGTPQMNGVSERRNSTLLDMVRSMMSLANLPNTFWGYALET 183
S EF +HL+ CGIV QLTPPGTPQ+NGVS+RRN TLLDMVRSMMS +LP +FWGYALET
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180
Query: 184 AAFTLNRAPSKAVEKTPYELWFGKIPKLSFLKVWGCEVYVKRLQGDKLAP--KSDKCLFV 241
A FT+NR PSK+++KTPYE+W GK P LSFLK+WGCEVYVKRLQ DKL P KSDKC FV
Sbjct: 181 AVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSKSDKCFFV 240
Query: 242 GYPKETRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQINTDIEIS 301
GYPKET+GYYFY+ E KVFVAR GVFLEK+F+S++ SG
Sbjct: 241 GYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSG--------------------- 279
Query: 302 RGLAAPIYTQSMEE-ENEVERVPPAQV-ESNSQETSQLVENTPKVAQAPRRSQRLQE--- 356
SME EN P Q + Q+ Q+V A A RRS+R++
Sbjct: 280 ----------SMETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPA 329
Query: 357 -----LSQKTDILLLEDNEPSTYNQAMTSPDSEKWLKAMRSEMDSMSENQVWNLIDLPDG 411
+ + DILLL ++EP+TY +AM P SEKWL AM+S+++SM NQVWNL+D D
Sbjct: 330 RYALLTTGQCDILLLGNDEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDPLDS 389
Query: 412 AKPIGCKWVFKVKTDKDGNVSVFKARLVSKGYKQIHGIDYDETFSPQDIIDQLKQSFAM 470
K I CKWVFK KTD DGNV ++KARLV+KG++QI G++YDETFSP ++ ++ A+
Sbjct: 390 VKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAI 448