BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0660.1
(678 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 571 0.0
ACS74199.1 putative gag-pol polyprotein [Fragaria x ananassa] 587 0.0
ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass... 583 0.0
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 571 bits (1472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 279/484 (57%), Positives = 343/484 (70%), Gaps = 43/484 (8%)
Query: 1 MQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSEINGTRYKARLVAKGYAQKEG 60
M EE+ESLHKN TW + LP+GK + CKW+YKKK+ + R KARLV KG+ QKEG
Sbjct: 1 MNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEG 60
Query: 61 VDYNEIFSPVVKHTSIRVLLSIVSHRDLELEQLDVKTAFLHGDLEEEIYMAQPEGYKVEG 120
+D+NEIFSPVV+HTSIR+LL+ V+ DLELEQLDVKTAFLHG+LEEEIYM QPEG+ V
Sbjct: 61 IDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPS 120
Query: 121 KENQVCRLRKSLYGLKQSPRQWYKRFDFFMVKHGFRRSDYDCCVYIKKLREGDFIYLLLY 180
KE+ VC+L+KSLYGLKQ+PRQWYK+FD FM+ G+ RS YD C+Y ++ +G FIYLLLY
Sbjct: 121 KEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLY 180
Query: 181 VDDMLITSRSMVEINKLKSQLSQMFEMKDMGAAKKILGMEIKRERSSKKLYLNQKGYIER 240
VDDMLI SR I+KLK+QL+ FEMK++GAAKKILGMEI R+R KL+L+Q+ YIER
Sbjct: 181 VDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIER 240
Query: 241 VVSRFGMQNAKAVSTPLAPHFRLSGRQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPD 300
++ RF M N K VSTPLA HF+LS P T E + M VPYASAVGSLMYAMVCTRPD
Sbjct: 241 LLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPD 300
Query: 301 ISQAVSMVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFG---GDTCQVSGYVDSDYAG 357
++ AVSMVSR+M NPGK HW AVKW+ RYLKGT + GL F T V+G+VDSDY G
Sbjct: 301 LAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGG 360
Query: 358 DLDRRRSTTDYVFRVHGAP----------------------------------------G 377
DLDRRRS + Y+F + + G
Sbjct: 361 DLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELG 420
Query: 378 IKQECVDVWCDSQSAIYLAKNQVHHARTKHIDVRYHFVRDVIEEGDVSLMKVHTDENLAD 437
+ Q+ + V+CDSQSAI+L KN +H +TKHIDV++HF+RD++ G+V L KVHT EN AD
Sbjct: 421 LTQDVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPAD 480
Query: 438 MLTK 441
MLTK
Sbjct: 481 MLTK 484
>ACS74199.1 putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 587 bits (1513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 285/487 (58%), Positives = 350/487 (71%), Gaps = 44/487 (9%)
Query: 1 MQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSEINGTRYKARLVAKGYAQKEG 60
M EEMESLHKN WE+VP P+ + ++GCKWV++KKE E + YKARLVAKGY+QKEG
Sbjct: 801 MTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEG 860
Query: 61 VDYNEIFSPVVKHTSIRVLLSIVSHRDLELEQLDVKTAFLHGDLEEEIYMAQPEGYKVEG 120
VDY+EIFSPVVKHTSIR+LLSI + D+E+EQ+DVKTAFLHGDLEE+IYM+QPEG+ G
Sbjct: 861 VDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETG 920
Query: 121 KENQVCRLRKSLYGLKQSPRQWYKRFDFFMVKHGFRRSDYDCCVYIKKLREGDFIYLLLY 180
KEN VCRL+KSLYGLKQSPRQWYK FD +M+K G+ R YDCCVY +G I LLLY
Sbjct: 921 KENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLY 980
Query: 181 VDDMLITSRSMVEINKLKSQLSQMFEMKDMGAAKKILGMEIKRERSSKKLYLNQKGYIER 240
VDDMLI R M++I KLK +L F+MKD+GAA+KILG+EI+R+R++ K++L+Q+ YI +
Sbjct: 981 VDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMK 1040
Query: 241 VVSRFGMQNAKAVSTPLAPHFRLSGRQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPD 300
++ RF M AK VS PLA HFRLS Q P+ E D M VPYASAVG LMYAM+CTRPD
Sbjct: 1041 ILERFNMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPD 1100
Query: 301 ISQAVSMVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCF---GGDTCQVSGYVDSDYAG 357
++QA+S+VS++M+NPGK HWEAVKW+ +YLK T G+ F G+ C V+G+VDSD+AG
Sbjct: 1101 LAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEAC-VAGFVDSDFAG 1159
Query: 358 DLDRRRSTTDYVFRVHGAP----------------------------------------G 377
DLDRRRST YVF G P G
Sbjct: 1160 DLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLG 1219
Query: 378 IKQECVDVWCDSQSAIYLAKNQVHHARTKHIDVRYHFVRDVIEEGDVSLMKVHTDENLAD 437
+ QE V V CDSQSAI+LAKNQV HARTKHID RYH +RD +E G + + KVHTD+N AD
Sbjct: 1220 VHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAAD 1279
Query: 438 MLTKVVT 444
LTK V+
Sbjct: 1280 FLTKPVS 1286
>ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 583 bits (1504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 284/483 (58%), Positives = 348/483 (72%), Gaps = 41/483 (8%)
Query: 1 MQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSEINGTRYKARLVAKGYAQKEG 60
M EEM+SL KN TWEVVPLP+ K I CKW++K+KE S +YKARLVA+GY+Q G
Sbjct: 836 MHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPG 895
Query: 61 VDYNEIFSPVVKHTSIRVLLSIVSHRDLELEQLDVKTAFLHGDLEEEIYMAQPEGYKVEG 120
VDYN++FSPVVKH+SIR LSIV+ DLELEQLDVKTAFLHG+LEE+IYM QPEG+ V G
Sbjct: 896 VDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPG 955
Query: 121 KENQVCRLRKSLYGLKQSPRQWYKRFDFFMVKHGFRRSDYDCCVYIKKLREGDFIYLLLY 180
KE VC+L++SLYGLKQSPRQW KRFD FM+ H F+RS YD CVYIK + G IYLLLY
Sbjct: 956 KEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLY 1014
Query: 181 VDDMLITSRSMVEINKLKSQLSQMFEMKDMGAAKKILGMEIKRERSSKKLYLNQKGYIER 240
VDDMLI ++S +EI KLK LS F+MKD+G+AKKILGMEI R+R S L+L+Q YI++
Sbjct: 1015 VDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKK 1074
Query: 241 VVSRFGMQNAKAVSTPLAPHFRLSGRQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPD 300
V+ RF MQNAKAVSTP+APHF+LS Q P+ E ++M RVPY+SAVGSLMYAMVC+RPD
Sbjct: 1075 VLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPD 1134
Query: 301 ISQAVSMVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDTCQVSGYVDSDYAGDLD 360
+S A+S+VSR+M+NPGK HW AV+W+ RYL+GT + L FG + GYVDSDYA DLD
Sbjct: 1135 LSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLD 1194
Query: 361 RRRSTTDYVFRVHGAP----------------------------------GIKQE----- 381
RRRS T YVF + G+ E
Sbjct: 1195 RRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVE 1254
Query: 382 -CVDVWCDSQSAIYLAKNQVHHARTKHIDVRYHFVRDVIEEGDVSLMKVHTDENLADMLT 440
C+ + CDSQSAIYL K+Q+ H RTKHID++YHFVRDVIEEG + + K+ T +N ADM+T
Sbjct: 1255 SCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMT 1314
Query: 441 KVV 443
K +
Sbjct: 1315 KPI 1317