BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0880.1
(175 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAB87099.1 putative retroelement pol polyprotein [Arabidopsis th... 66 2e-09
AAM98191.1 unknown protein [Arabidopsis thaliana] AAR24647.1 At2... 65 2e-09
CAA18107.1 LTR retrotransposon like protein [Arabidopsis thalian... 65 4e-09
>AAB87099.1 putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 1 MFVGYPHGQKGFRVYDFPTRKIITSRDVLFHEDRFPMSTISSSSSSSSPRSFIFIMDDGS 60
+F+GYPHG+K +RVYD T KI SRDV FHED +P +T + S+ P + + DD
Sbjct: 749 VFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDD-- 806
Query: 61 FQFLATSTK 69
FL ST+
Sbjct: 807 -WFLPISTQ 814
>AAM98191.1 unknown protein [Arabidopsis thaliana] AAR24647.1 At2g23330
[Arabidopsis thaliana] BAE99183.1 putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 776
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 1 MFVGYPHGQKGFRVYDFPTRKIITSRDVLFHEDRFPMSTISSSSSSSSPRSFIFIMDDGS 60
+F+GYPHG+K +RVYD T KI SRDV FHED +P +T + S+ P + + DD
Sbjct: 29 VFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDD-- 86
Query: 61 FQFLATSTK 69
FL ST+
Sbjct: 87 -WFLPISTQ 94
>CAA18107.1 LTR retrotransposon like protein [Arabidopsis thaliana] CAB79159.1
LTR retrotransposon like protein [Arabidopsis thaliana]
Length = 1109
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 1 MFVGYPHGQKGFRVYDFPTRKIITSRDVLFHEDRFPMSTISSSSSSSSPRSFIFIMDDG 59
+FVGYPHGQKG+R++D +K SRDV+F E FP S +S + +SS ++F+ + G
Sbjct: 539 VFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNRFTSSHKAFLAAVTAG 597