BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0400.1
(546 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_009129000.1 PREDICTED: putative ribonuclease H protein At1g65... 202 8e-56
XP_009140866.1 PREDICTED: uncharacterized protein LOC103864849 [... 209 2e-54
AID60144.1 hypothetical protein [Brassica napus] 194 9e-53
>XP_009129000.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 423
Score = 202 bits (514), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 170/350 (48%), Gaps = 9/350 (2%)
Query: 8 IGWENLCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIQDQHFWIL 67
IGW +C P EGGLG R++ + + L+ IW L++ T+LWA+W R+ + FW L
Sbjct: 64 IGWTTICLPKQEGGLGIRSLTVWNKVQCLKFIWILLTSSTSLWADWHRSVHLSTSSFWTL 123
Query: 68 SASRRSSWCWRRILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFEETYRYDSH 127
S + SW W+R+L R A + + +G+G T FW D+W P G L+D +
Sbjct: 124 SIDQADSWAWKRLLKLRPLAAQFCRSLVGNGQTTSFWWDVWTPLGQLIDFIGPSGPRALR 183
Query: 128 LNLDARVSQFIGQSGWVFPTHAAAMLVTIAVEAREVV--VDSTLRDEVIWMPSQNG--EF 183
L+ DA+V+ I +GW P + V + + + + + D IW+ + F
Sbjct: 184 LHQDAKVADAIHNTGWTLPHPRSQREVELHAHLTTITLPLPNNIDDSYIWVAGNSPLTVF 243
Query: 184 TLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTC 243
+ T+E +RPR W +VW G IPKH F W A RL TRS LA+WGM I C
Sbjct: 244 SSAATWEVMRPRQDEKDWFDVVWFKGHIPKHAFTMWTANYDRLPTRSRLAAWGMTIAPDC 303
Query: 244 VFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSIAAR 303
C G ET HL F C+ + IW + + W L W + S
Sbjct: 304 ALCSGAVETRDHLLFTCAFSATIWREVFRRCQAPSSAFITWAELLSWIRSSRS--SAVTL 361
Query: 304 VGRLLLNAYGYHIWKERNNKVFRSNVMSPGLIIHTICDEVRIKLNTVTKR 353
+ ++ + A YHIWK+RNN + N++ P + I EVR N ++ R
Sbjct: 362 LRKVAVQAVIYHIWKQRNNLIHNRNLVPPMTVFKGIDKEVR---NIISSR 408
>XP_009140866.1 PREDICTED: uncharacterized protein LOC103864849 [Brassica rapa]
Length = 1622
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 186/373 (49%), Gaps = 22/373 (5%)
Query: 8 IGWENLCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIQDQHFWIL 67
I W+++C P + GGLG R + + L+ IW + + +LW WVR NLI ++FW+L
Sbjct: 1253 IAWDSVCTPKEAGGLGLRRLADWNKVLGLKLIWLIFTAGGSLWVSWVRRNLIGRENFWML 1312
Query: 68 SASRRSSWCWRRILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFEETYRYDSH 127
+ SRR SW W+ I R A+ ++ LG G FW D W G L+D E +
Sbjct: 1313 NPSRRGSWIWKAICKLRPLARPMVHCELGSGITASFWYDNWTSIGPLIDLVGENGPQVTG 1372
Query: 128 LNLDARVSQFIGQSGWVF----PTHAAAMLVTIAVEAREVVVDSTLRDEVIWMPSQ---N 180
L+++A V+ + GW H L+ + + V+DS + D+ +W P+ N
Sbjct: 1373 LSINAVVADALTNGGWWLDRSRSRHPIISLLKECLPNAQEVLDSEVDDKYVWYPTAERGN 1432
Query: 181 GEFTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 240
G F+ ET+ A+ P + W VW G IPKH FITW+A R R+ TR L WG+ +
Sbjct: 1433 GCFSTSETWRALHPPPAEVFWHKAVWFVGRIPKHAFITWIAARDRMVTRDKLIGWGLTVP 1492
Query: 241 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSI 300
+ CV C G +E+ HLFF C+ + +W L ++ V ++ L+W L
Sbjct: 1493 SNCVLCSGHDESRQHLFFECAYSHQVWSFFLSRLHL--VVPQGFDEVLRW-------LKT 1543
Query: 301 AARVG------RLLLNAYGYHIWKERNNKVFRSNVMSPGLIIHTICDEVRIKLNTVTKRF 354
++R G +L+ A Y IWKERN ++ S PG +I I +R++L+ + +R
Sbjct: 1544 SSRDGNVNLIMKLIHQAVLYLIWKERNARIHSSVEKPPGALIAEIKQTIRLRLDPLARRQ 1603
Query: 355 EDTEENRRTIDRW 367
T + W
Sbjct: 1604 RITAGQSSVLATW 1616
>AID60144.1 hypothetical protein [Brassica napus]
Length = 436
Score = 194 bits (493), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 179/352 (50%), Gaps = 10/352 (2%)
Query: 8 IGWENLCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIQDQHFWIL 67
I WE++C P + GGLG + + L+ IW L + +LW WVR NLI ++FW+L
Sbjct: 69 IAWESVCTPKEAGGLGLKRLADWNVVLGLKLIWLLFAAGGSLWVSWVRRNLIGRENFWML 128
Query: 68 SASRRSSWCWRRILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFEETYRYDSH 127
+RR SW WR + R A+ I +G G FW D W G L++ E +
Sbjct: 129 VPNRRGSWIWRSLCKLRPKARPFIKCQVGSGITASFWMDDWTSLGPLIEVVGERGPVVTG 188
Query: 128 LNLDARVSQFIGQSGWVF----PTHAAAMLVTIAVEAREVVVDSTLRDEVIWMPS-QNGE 182
L+++ARV + GW F + ML+ ++ + +++S + D +W+ S NG
Sbjct: 189 LSINARVVDALTSDGWCFERSRSRSPSIMLLRDSMPDAQPILNSEVDDTYVWVTSGHNGS 248
Query: 183 --FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 240
F+ ET++ + P + W ++W G IPKH F++W+A R R+ TR L WG+++
Sbjct: 249 ETFSTSETWKRLFPCMLEVFWHEVIWFSGRIPKHAFLSWVAARDRMVTRDRLLRWGLLVP 308
Query: 241 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSI 300
TCV C G E HLFF C+ +K +W ++ +E L+W N ++
Sbjct: 309 ATCVLCVGHNEDRQHLFFDCNFSKQVWTFFTSRLRLDPPVL--FEDGLRWLKNPAREKNV 366
Query: 301 AARVGRLLLNAYGYHIWKERNNKVFRSNVMSPGLIIHTICDEVRIKLNTVTK 352
V RLL A Y IWKERN+++ SP II + +R++L+ + +
Sbjct: 367 KLIV-RLLHQACLYIIWKERNSRIHTDEARSPEAIIAEVKQIIRLRLDPLAR 417