BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0520.1
(286 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_013624696.1 PREDICTED: uncharacterized protein LOC106330835 [... 133 1e-33
XP_009128617.1 PREDICTED: uncharacterized protein LOC103853466 [... 132 2e-33
XP_009114429.1 PREDICTED: putative ribonuclease H protein At1g65... 133 6e-33
>XP_013624696.1 PREDICTED: uncharacterized protein LOC106330835 [Brassica oleracea
var. oleracea]
Length = 309
Score = 133 bits (334), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 123/257 (47%), Gaps = 20/257 (7%)
Query: 23 FLLHIIGNGEDTLFWTDHWHPLGVLYEFFEEQHRYSSFLSINTKVAGFLRDGALYV--PR 80
F+ +GNGE FW DHW G+L FF +SI++ VA + + R
Sbjct: 33 FIRCQLGNGEKASFWYDHWCEKGLLINFFGPSGPTQLDISIDSTVASACSETGWKIRHAR 92
Query: 81 FLQPDLNTVFSRLHEVAVHSLNQDRKVWRVS--SHGVYTLKDTYEAIRPRSQTVGWHSIV 138
Q + +F + S D W+V+ S ++ K T+EA+RPR QT W ++
Sbjct: 93 SAQAEDFQIFLCSIPLPSLSPTADSYYWQVANVSTNSFSAKLTWEALRPRGQTQVWSDVI 152
Query: 139 WYSQCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVSYGICGLSIETESHLFSSCSFAQD 198
W+ P H+F+ W+A + L TR RL SWG+QI IC ET HLF CS+++
Sbjct: 153 WFKGSTPSHAFMMWVAQLDRLPTRSRLVSWGLQIADCCCICNTYRETRDHLFLICSYSEH 212
Query: 199 LWHRLLADLGF------VWVGFTSFQD-AVHWCSRHFHGESVLAKVGRLVFNAIIYHIWQ 251
+W + LG+ W F S+ D + CS F +LV +A IY IWQ
Sbjct: 213 IWSVVTTRLGYRQTLFHTWTAFISWLDIKDNICSSTFR---------KLVSHATIYKIWQ 263
Query: 252 ERNNRVFRQKSLCPAAL 268
ERNNR+ + P L
Sbjct: 264 ERNNRLHNNSTTLPLVL 280
>XP_009128617.1 PREDICTED: uncharacterized protein LOC103853466 [Brassica rapa]
Length = 286
Score = 132 bits (332), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 11/253 (4%)
Query: 23 FLLHIIGNGEDTLFWTDHWHPLGVLYEFFEEQHRYSSFLSINTKVAGFLRDGALYVPRFL 82
L+ +GNG FW D+W LG L + + + LS N VAG + +GA ++ R
Sbjct: 1 MLVCEVGNGRSASFWHDNWTSLGPLIDITGPRGPAVTGLSENEVVAGAISNGAWWISRSR 60
Query: 83 QPD--LNTVFSRLHEVA--VHSLNQDRKVWRVSSHGV---YTLKDTYEAIRPRSQTVGWH 135
+ ++ + L EVA + S D +W+ ++ ++ +T+EA+R + +TV WH
Sbjct: 61 SRNRFISLLRECLPEVAPILSSEVDDIYLWKPGNNAASSSFSTANTWEALRTQGETVFWH 120
Query: 136 SIVWYSQCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVSYGICGLSIETESHLFSSCSF 195
VW+ +PKH+FI W+ + L TR R+ WG+Q+ +C + E+ HLF C F
Sbjct: 121 RQVWFQGRIPKHAFITWVTARDRLGTRDRMRRWGLQVPAGCILCNAADESRQHLFFDCCF 180
Query: 196 AQDLWHRLLADLGFVWVGFTSFQDAVHWCSRHFHGESVLAKVGRLVFNAIIYHIWQERNN 255
+ ++W A L F F+D + W S E L + +LV+ A IY IW+ERN
Sbjct: 181 SAEVWSFFCARLSI--TPFVIFEDGLRWLSNPSSDE-FLKLIIKLVYQAAIYSIWKERNA 237
Query: 256 RVFRQKSLCPAAL 268
RV Q S PA +
Sbjct: 238 RVHNQ-SFRPARI 249
>XP_009114429.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 384
Score = 133 bits (335), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 123/241 (51%), Gaps = 10/241 (4%)
Query: 23 FLLHIIGNGEDTLFWTDHWHPLGVLYEFFEEQHRYSSFLSINTKVAGFLRD-GALYVPRF 81
F+ +GNG+ FW D W LG L FF + + I++KVA D G L P
Sbjct: 105 FITCTLGNGDKASFWFDSWCVLGPLERFFGPSGPMQTGMEIDSKVADACSDAGWLLRPAR 164
Query: 82 LQP--DLNTVFSRLHEVAVHSLNQDRKVWRVSSHGV--YTLKDTYEAIRPRSQTVGWHSI 137
Q +L + + + HS + D WRV+ + Y+ K T+E++RPR Q W
Sbjct: 165 SQEAEELQILLCSV-PLPSHSQSPDTYSWRVNDTDMESYSTKLTWESLRPRGQKQDWAGK 223
Query: 138 VWYSQCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVSYGICGLSIETESHLFSSCSFAQ 197
VW+ VP H+F+ W+A + L TR RL+SWG+QID +C ET H+F C +A+
Sbjct: 224 VWFKGHVPSHTFMMWVAHLDRLPTRSRLASWGLQIDTCCCVCNHFHETRDHVFLRCEYAE 283
Query: 198 DLWHRLLADLGFVWVGFTSFQDAVHWCS-RHFHGESVLAKVGRLVFNAIIYHIWQERNNR 256
+W + LG+ V F ++ + W R H S L K L AI+Y +W+ERN R
Sbjct: 284 QIWKMAIRRLGYRPVLFHTWDALLAWIDMRVRHCPSTLRK---LTVQAILYRLWRERNQR 340
Query: 257 V 257
+
Sbjct: 341 L 341