BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0790.1
(547 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_009129000.1 PREDICTED: putative ribonuclease H protein At1g65... 224 5e-64
XP_009113141.1 PREDICTED: putative ribonuclease H protein At1g65... 214 6e-60
XP_009139323.1 PREDICTED: putative ribonuclease H protein At1g65... 209 2e-58
>XP_009129000.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 423
Score = 224 bits (570), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 184/377 (48%), Gaps = 21/377 (5%)
Query: 4 INSIFSKFFWSGADMGCKRAPIGWESLCYPTDEGGLGFRNIEVLFEASNLRHIWDLVSGK 63
I S+ +KF WSG A IGW ++C P EGGLG R++ V + L+ IW L++
Sbjct: 43 IESLCAKFLWSGNIDKKAIAKIGWTTICLPKQEGGLGIRSLTVWNKVQCLKFIWILLTSS 102
Query: 64 KTLWADWVRNNLIKDQYFWTLSASSRSSWCWRRILASRPMALRLICTSLGDGHDTKFWTD 123
+LWADW R+ + FWTLS SW W+R+L RP+A + + +G+G T FW D
Sbjct: 103 TSLWADWHRSVHLSTSSFWTLSIDQADSWAWKRLLKLRPLAAQFCRSLVGNGQTTSFWWD 162
Query: 124 VWHPRGLLFDAFEETHRYDSYLHLDARVSQFIGLSGWVFP-------IHVAAMLGNIEVE 176
VW P G L D + LH DA+V+ I +GW P + + A L I +
Sbjct: 163 VWTPLGQLIDFIGPSGPRALRLHQDAKVADAIHNTGWTLPHPRSQREVELHAHLTTITLP 222
Query: 177 AREVVVDSTLRDEVIWTPSQN--GEFTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCFI 234
+ + + D IW + F+ T+E +RPR W +VW G IPKH F
Sbjct: 223 -----LPNNIDDSYIWVAGNSPLTVFSSAATWEVMRPRQDEKDWFDVVWFKGHIPKHAFT 277
Query: 235 TWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLLKMGYQ 294
W A RL TRS LA+WGM I C C G ET HL F C + IW + +
Sbjct: 278 MWTANYDRLPTRSRLAAWGMTIAPDCALCSGAVETRDHLLFTCAFSATIWREVFRRCQAP 337
Query: 295 RVSAADWEGELQWC-INHFGGISIAARVGLMLLNAYVYHIWKERNNRVFRSNVMSPELII 353
+ W L W + +++ +V + A +YHIWK+RNN + N++ P +
Sbjct: 338 SSAFITWAELLSWIRSSRSSAVTLLRKVA---VQAVIYHIWKQRNNLIHNRNLVPPMTVF 394
Query: 354 HTICDEVRIKLNTVTKR 370
I EVR N ++ R
Sbjct: 395 KGIDKEVR---NIISSR 408
>XP_009113141.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 483
Score = 214 bits (546), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 190/388 (48%), Gaps = 28/388 (7%)
Query: 1 MNDINSIFSKFFWSGADMGCKRAPIGWESLCYPTDEGGLGFRNIEVLFEASNLRHIWDLV 60
+ I S+ S+F WSG+ A + W+++C P +EGGLG R+ + + L+ IW L+
Sbjct: 100 IRQIESLCSRFLWSGSLEKRSIAKVDWKTVCLPKEEGGLGLRSYLIWNQVLCLKFIWLLL 159
Query: 61 SGKKTLWADWVRNNLIKDQYFWTLSASSRSSWCWRRILASRPMALRLICTSLGDGHDTKF 120
S +LW DW ++ + Q FWT++A+ SW WR++L RP+ALR + LG+G +T F
Sbjct: 160 SNTPSLWVDWHQSTHLTGQSFWTINAAPTDSWAWRKLLDLRPLALRFCKSQLGNGKNTSF 219
Query: 121 WTDVWHPRGLLFDAFEETHRYDSYLHLDARVSQFIGLSGWVFP-------IHVAAMLGNI 173
W DVW P G L + + A V+ + S W P + + A L I
Sbjct: 220 WHDVWTPLGQLRSFIGDAGPRSLRVRTTAMVADTVTRSRWNLPHPRSQREVDLHAYLTTI 279
Query: 174 EVEAREVVVDSTLRDEVIWTP--SQNGEFTLKETYEAIRPRGTRLSWISLVWSPGGIPKH 231
+ + VD + DE +W S +F T+E +RPR SW+ +VW G IPKH
Sbjct: 280 NL---PLPVD--VEDEFVWVAGDSTFHDFRSSTTWEVLRPRQASQSWVDVVWFKGAIPKH 334
Query: 232 CFITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLLKM 291
F W+A RL TRS LA+WG+ I +SC FC +ET HL C + IW + ++
Sbjct: 335 SFNMWVANYDRLPTRSRLAAWGLPITSSCPFCSNFDETRDHLLLSCEYSVAIWREIFIRC 394
Query: 292 GYQRVSAADWEGELQWCINHFGGISIAARVGLMLL-----NAYVYHIWKERNNRVFRSNV 346
A+W L W I +A L LL VYH+WK+RNN +
Sbjct: 395 HPPASPFANWSELLSW-------IRVATSSKLKLLRKLASQTMVYHVWKQRNNLIHNQTS 447
Query: 347 MSPELIIHTICDEVR--IKLNTVTKRFE 372
+ + I E+R I KRF+
Sbjct: 448 VPAATVFRGIDRELRNIISARRHKKRFD 475
>XP_009139323.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 424
Score = 209 bits (531), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 1 MNDINSIFSKFFWSGADMGCKRAPIGWESLCYPTDEGGLGFRNIEVLFEASNLRHIWDLV 60
M+DI S+ S F WSG+ +A + W +C P +EGGLG R + + S+L+ IW L+
Sbjct: 37 MDDIESMCSAFLWSGSPSDSTKAKVAWRDVCSPLEEGGLGVRALTEINTVSSLKLIWRLL 96
Query: 61 SGKKTLWADWVRNNLIKDQYFWTLSASSRSSWCWRRILASRPMALRLICTSLGDGHDTKF 120
SG ++LW DWVR L++++ FW + + SW WR++L R +A R + + +G F
Sbjct: 97 SGSQSLWVDWVRKYLMRNESFWDIRDTGLGSWIWRKLLRLRYLAKRFVRMEVHNGQLVHF 156
Query: 121 WTDVWHPRGLLFDAFEETHRYDSYLHLDARVSQFIGLSGWVFPIHVAAMLGNI--EVEAR 178
WTD+WHP G L + E + A +S+ + W F + I +EA
Sbjct: 157 WTDIWHPSGRLIEVAGEIGTQKLGIARSALISEVRVGAHWSFRRCRDVRMREIIHMIEAH 216
Query: 179 EVVVDSTLRDEVIWTPSQN---GEFTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCFIT 235
+ D T D V+W ++N F+ T++ IR T+ +W +VW G+P+ FIT
Sbjct: 217 HLAEDRTANDIVLWRKNENEFCDIFSTSATWQQIRTHRTQTTWSKVVWFSLGVPRFAFIT 276
Query: 236 WLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLLKMGYQR 295
WLA + RL T + SWG I C+FCG E+ HLFF CP T +W ++ + R
Sbjct: 277 WLAIKNRLSTGDRVQSWG--ITQGCLFCGEPHESRDHLFFACPYTFTLWIEVVGSL-LDR 333
Query: 296 VSAADWEGELQWCINHF-GGISIAARVGLMLL--NAYVYHIWKERNNRVFRSNVMSPELI 352
+ DWE L +H G R L+ L VY IW+ERNNR + +
Sbjct: 334 DADPDWESTL----DHLQTGRFDQTRFILLRLVFQVTVYMIWRERNNRRHSQKPRQVQQL 389
Query: 353 IHTICDEVRIKLNTV 367
I VR +L +V
Sbjct: 390 AKIIDKTVRNRLLSV 404